TkA04G380550 | RubberDandelionOmics

Gene overview

TkA04G380550

Reference: TK1151 Chr: Chr04 Coordinates: 95866679-95867123 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

312 bp · TkA04G380550|TK1151|cDNA

ATGGCCTTCCCCGATGTGATTCACGCATTTAAACCAAACCCTAAATCGCACATCCAGGAAGACAGGAGAATTCTCGATTTCCTGTCCCACCATCCGGAAAGCTTAAACACCATGACATTCTGGCTCGATGATGTTGGCATCCTCTTAATTTTTTTTATAATCATCTTAGGTCTGTCAAATTCAATCATGGGTTTCTATTTGGAAAATCCAACACACGAACACAAAGGGTTTGCTAAATTTATCTTACATTCTGGCCTGTT...

CDS

Download CDS FASTA

312 bp · TkA04G380550|TK1151|CDS

ATGGCCTTCCCCGATGTGATTCACGCATTTAAACCAAACCCTAAATCGCACATCCAGGAAGACAGGAGAATTCTCGATTTCCTGTCCCACCATCCGGAAAGCTTAAACACCATGACATTCTGGCTCGATGATGTTGGCATCCTCTTAATTTTTTTTATAATCATCTTAGGTCTGTCAAATTCAATCATGGGTTTCTATTTGGAAAATCCAACACACGAACACAAAGGGTTTGCTAAATTTATCTTACATTCTGGCCTGTT...

Protein

Download Protein FASTA

103 aa · TkA04G380550|TK1151|PROTEIN

MAFPDVIHAFKPNPKSHIQEDRRILDFLSHHPESLNTMTFWLDDVGILLIFFIIILGLSNSIMGFYLENPTHEHKGFAKFILHSGLLIAIIFNLGFQTISENE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G380550`
TK1151 ID	TkA04G380550
OH-1004 ID	LXL04_015400
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	96.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G380550

Location Chr04:95866679-95867123 (-)

Description Similar to CAT2: Catalase isozyme 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35090`	Catalyzes the degradation of hydrogen peroxide (H(2)O(2)) generated by peroxisomal oxidases to water and oxygen, thereby protecting cells from the toxic effects of hydrogen peroxide.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_015400 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009408 response to heat Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:1902074 response to salt Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

dosa:Os02g0115700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.277

Rank 1 · TkA04G380550 · TK1151

Mitochondrion0.193

Rank 2 · TkA04G380550 · TK1151

Plastid0.134

Rank 3 · TkA04G380550 · TK1151

Cytoplasm0.131

Rank 4 · TkA04G380550 · TK1151

Golgi apparatus0.126

Rank 5 · TkA04G380550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00199Catalase1-47 aa

PF04834Adeno_E3_14_522-59 aa

PF06664WLS-like_TM26-91 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G380550	`PF00199`	Catalase	1	47	6.4e-09	36.1
TkA04G380550	`PF04834`	Adeno_E3_14_5	22	59	0.053	14.8
TkA04G380550	`PF06664`	WLS-like_TM	26	91	0.041	13.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P25819`	Arabidopsis thaliana	sp\|P25819\|CATA2_ARATH Catalase-2	74.500%	Swiss-Prot	Low

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