TkA04G367760 | RubberDandelionOmics

Gene overview

TkA04G367760

Reference: TK1151 Chr: Chr04 Coordinates: 92436969-92440471 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1963 bp · TkA04G367760|TK1151|cDNA

AACGACCAGCAAACTCGTATCCACTCTACTCGAAAGCTTCAGTAGATAAGATTTTTCCCTCTCCTCCACCCTCCATCTCCGGCAATGGCGGAAGCTTCCAGGATCTTCCACACCACACTCATGCCTTCATTATCGCAAGTTTTATCTCCTAGAAAGCCTTGTTCTCTAACCATCACTCAACGAAAAACCTCACCAGTGATCATCCGCTGCACAATCTCCACCAGCAGCAGCAGCGATACAGCTAAGGCTTCCACCGCTCC...

CDS

Download CDS FASTA

1395 bp · TkA04G367760|TK1151|CDS

ATGGCGGAAGCTTCCAGGATCTTCCACACCACACTCATGCCTTCATTATCGCAAGTTTTATCTCCTAGAAAGCCTTGTTCTCTAACCATCACTCAACGAAAAACCTCACCAGTGATCATCCGCTGCACAATCTCCACCAGCAGCAGCAGCGATACAGCTAAGGCTTCCACCGCTCCTCAGCCGATACCATGGGGTTGCGAAATTGATTCTCTGGAGAACGCGGCCGCGTTGCAGAAATGGTTGACAGATTCCGGTTTGCC...

Protein

Download Protein FASTA

464 aa · TkA04G367760|TK1151|PROTEIN

MAEASRIFHTTLMPSLSQVLSPRKPCSLTITQRKTSPVIIRCTISTSSSSDTAKASTAPQPIPWGCEIDSLENAAALQKWLTDSGLPPQKMDLRQVDVGERGLVANNNIRKGEKILFVPPSLVISANSEWSFPEAGEVLKRYDVPDWPLIATYLISEASLMKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERINNVTGTYNDLRDRIFSKHPNLFPEEIFNMETFKWSFGILFSRLVRLPSLDGRVAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G367760`
TK1151 ID	TkA04G367760
OH-1004 ID	LXL04_037961
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G367760`
Location	Chr04:92436969-92440471 (-)
Description	Similar to RBCMT: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_037961` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0018021 peptidyl-histidine methylation Biological Process GO:0030047 actin modification Biological Process GO:0032259 methylation Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process GO:0070472 regulation of uterine smooth muscle contraction Biological Process GO:0000785 chromatin Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0009507 chloroplast Cellular Component GO:0003713 transcription coactivator activity Molecular Function
KEGG gene cross-reference	ag:AAA69903 ag:AAC49566 hsa:84193 nta:107778201 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.972

Rank 1 · TkA04G367760 · TK1151

Mitochondrion0.040

Rank 2 · TkA04G367760 · TK1151

Cytoplasm0.022

Rank 3 · TkA04G367760 · TK1151

Nucleus0.021

Rank 4 · TkA04G367760 · TK1151

Peroxisome0.015

Rank 5 · TkA04G367760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00856SET101-305 aa

PF27829Ctm1259-325 aa

PF09273Rubis-subs-bind338-435 aa

PF00856SET405-448 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G367760	`PF00856`	SET	101	305	9.1e-13	49.3
TkA04G367760	`PF27829`	Ctm1	259	325	0.083	12.1
TkA04G367760	`PF09273`	Rubis-subs-bind	338	435	1e-17	65.7
TkA04G367760	`PF00856`	SET	405	448	9.1e-13	49.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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