RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G365510
Reference: TK1151 Chr: Chr04 Coordinates: 91863685-91867943 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3380 bp · TkA04G365510|TK1151|cDNA

AAAAATTCTCCCTTCAAAGAGACTGTAAAATTTATCTATGGCGCGAATAATCGAACTAAAAACACCCTCCAGAGTCCAGACTAGGGTTCATCTCCACAAATAATCAATCCCTCAAAATTCTCCATTTTCAACGAGAAACAAACGATGGGGCTTTTCACGACCGAAGTCCATGAGTTGAAAACCCTATTATCTGCTAATAATAACTCAAAATCAGAAAAATCGTCCCTGTACTCGACGCTATTACAACTCCAAGAACACTC...

CDS

Download CDS FASTA

2955 bp · TkA04G365510|TK1151|CDS

ATGGGGCTTTTCACGACCGAAGTCCATGAGTTGAAAACCCTATTATCTGCTAATAATAACTCAAAATCAGAAAAATCGTCCCTGTACTCGACGCTATTACAACTCCAAGAACACTCGACTACTAATCCTTCCCTCCTCCAATCTCTGGCTGATTCATCTCACGTTCTTCTAACGTCGATGGCGAACGATATTTCAGACGATGATGAGGAAATTGCTGCACAGGCCTTGAAGTGCATGGGATTCATGATTTACCATCCATC...

Protein

Download Protein FASTA

984 aa · TkA04G365510|TK1151|PROTEIN

MGLFTTEVHELKTLLSANNNSKSEKSSLYSTLLQLQEHSTTNPSLLQSLADSSHVLLTSMANDISDDDEEIAAQALKCMGFMIYHPSIVTGILGADADMVLNSLQKVILSTRIKSVCNLGVWCISVQQFSPSILDAHIDSLVRAIVHALDNPTGSLSTTFEAMQAVMKLVTQSNEKMREISNLWAPPIYRRLVSANKREKDMSERCLLKIKPTLCPPPKSLSKAVIIDVKRKLLPAMEELLKNGMKIQAIQSWGWFTLLI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G365510
TK1151 IDTkA04G365510
OH-1004 IDLXL04_002729
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)96.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G365510
LocationChr04:91863685-91867943 (+)
DescriptionSimilar to Rif1: Telomere-associated protein RIF1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002729 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000723 telomere maintenance Biological Process
GO:0006281 DNA repair Biological Process
GO:0006974 DNA damage response Biological Process
GO:0019827 stem cell population maintenance Biological Process
GO:0031509 subtelomeric heterochromatin formation Biological Process
GO:0043247 telomere maintenance in response to DNA damage Biological Process
GO:0045814 negative regulation of gene expression, epigenetic Biological Process
GO:1990830 cellular response to leukemia inhibitory factor Biological Process
GO:2000042 negative regulation of double-strand break repair via homologous recombination Biological Process
GO:2001034 positive regulation of double-strand break repair via nonhomologous end joining Biological Process
GO:0000781 chromosome, telomeric region Cellular Component
KEGG gene cross-reference
gga:424316
hsa:55183
mmu:51869
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.673
Rank 1 · TkA04G365510 · TK1151
Cytoplasm0.354
Rank 2 · TkA04G365510 · TK1151
Golgi apparatus0.038
Rank 3 · TkA04G365510 · TK1151
Cell membrane0.036
Rank 4 · TkA04G365510 · TK1151
Endoplasmic reticulum0.032
Rank 5 · TkA04G365510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08146BP28CT14-35 aa
PF12231Rif1_N19-363 aa
PF16213DCB23-108 aa
PF25782TPR_CAND126-84 aa
PF21047HEAT_Maestro56-114 aa
PF14644DUF445698-202 aa
PF25782TPR_CAND1126-171 aa
PF16213DCB127-174 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G365510PF08146BP28CT14350.8110.3
TkA04G365510PF12231Rif1_N193638.3e-38131.0
TkA04G365510PF16213DCB231080.1812.3
TkA04G365510PF25782TPR_CAND126840.5111.4
TkA04G365510PF21047HEAT_Maestro561140.1212.9
TkA04G365510PF14644DUF4456982020.1113.0
TkA04G365510PF25782TPR_CAND11261710.5111.4
TkA04G365510PF16213DCB1271740.1812.3
TkA04G365510PF16213DCB3263750.1812.3
TkA04G365510PF16213DCB4504900.1812.3
TkA04G365510PF08146BP28CT4504960.8110.3
TkA04G365510PF21047HEAT_Maestro4605130.1212.9
TkA04G365510PF08146BP28CT5586070.8110.3
TkA04G365510PF25782TPR_CAND15766070.5111.4
TkA04G365510PF16213DCB7097490.1812.3
TkA04G365510PF25782TPR_CAND17107600.5111.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser