TkA04G355490 | RubberDandelionOmics

Gene overview

TkA04G355490

Reference: TK1151 Chr: Chr04 Coordinates: 89645797-89648230 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2347 bp · TkA04G355490|TK1151|cDNA

AAAAAAGTTGGATGCCTAGATGTGTACAAACTCAATAGTTCGTTACTCTCATAATGAATGTCATGTACTTTTCCTGGCCACGTAGGTGCCACGTTTGTGCCACATAAGACGAAACCGGTGAAATCCGGTCAAGTTGCTTTCTTTTGATCACGAAATAACAGTTCGTTACCTAAATATGTACAAAAAATAATTAGATGTCTAGATGTGTCTAAACGAAATAGTTGGGTACGTTCAAAAGTCAAAATCTCTTTTGAAAACTA...

CDS

Download CDS FASTA

1686 bp · TkA04G355490|TK1151|CDS

ATGAGAATCCCGAATCAATCGCTCCATGAATCCCAATCCAATACCGACGACCCACTTATAAACCTCCTCGCTCCGTTAAACCCCCAATCATCCGCCATCACCACCGCCGCCGCCGCCATGGATCAGCAACCTCAACCACCGAGATCCTACTGGCGATTCAGCAAAAAAGACTTCTACCCCGAACCCTCTTTCCAAAACCTCTCAGCCTACAAGGCCGCGTTCTCGCAAACCCTCCACCGCCTCCGCGACCGCTGCCTCGG...

Protein

Download Protein FASTA

561 aa · TkA04G355490|TK1151|PROTEIN

MRIPNQSLHESQSNTDDPLINLLAPLNPQSSAITTAAAAMDQQPQPPRSYWRFSKKDFYPEPSFQNLSAYKAAFSQTLHRLRDRCLGRSTDATELIELKKQSENEMRKCLTWVDLIWLGFGSVVGSGIFTITGLEARNDAGPSIVLSYALSGLSALFSVFCYTEFAVEIPIAGGSFSFLRVELGDFIAFIAAGNILLEAVAGAAGLARSFSSYFASMFSSNPDILRIRIDSFPEGFNLLDPIAVAILFIANMVAMRGTKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G355490`
TK1151 ID	TkA04G355490
OH-1004 ID	LXL04_037829
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.200
Protein coverage (%)	TK1151 91.622 / OH-1004 71.888 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G355490

Location Chr04:89645797-89648230 (+)

Description Similar to CAT8: Cationic amino acid transporter 8, vacuolar

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17120`	Permease involved in the transport of the cationic neutral or acidic amino acids.	Molecular and functional characterization of a family of amino acid transporters from Arabidopsis.2004 · DOI: 10.1104/pp.104.045278
`At2g34960`	High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, and, to a lower extent, citrulline and glutamate).	Molecular and functional characterization of a family of amino acid transporters from Arabidopsis.2004 · DOI: 10.1104/pp.104.045278
`At4g21120`	High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, lysine, histidine, citrulline, valine, and glutamate).	No verified direct reference in this release
`At5g04770`	Permease involved in the transport of the cationic neutral or acidic amino acids.	Molecular and functional characterization of a family of amino acid transporters from Arabidopsis.2004 · DOI: 10.1104/pp.104.045278
`At3g10600`	Permease involved in the transport of the cationic amino acids.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037829 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006865 amino acid transport Biological Process

GO:0009624 response to nematode Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G17120

ath:AT2G34960

ath:AT3G10600

ath:AT4G21120

ath:AT5G04770

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.425

Rank 1 · TkA04G355490 · TK1151

Lysosome / Vacuole0.286

Rank 2 · TkA04G355490 · TK1151

Endoplasmic reticulum0.145

Rank 3 · TkA04G355490 · TK1151

Cytoplasm0.113

Rank 4 · TkA04G355490 · TK1151

Golgi apparatus0.075

Rank 5 · TkA04G355490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13520AA_permease_2110-508 aa

PF00324AA_permease115-508 aa

PF03845Spore_permease116-189 aa

PF03845Spore_permease244-358 aa

PF13301DUF4079396-512 aa

PF03845Spore_permease431-477 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G355490	`PF13520`	AA_permease_2	110	508	2.3e-51	175.8
TkA04G355490	`PF00324`	AA_permease	115	508	4.7e-30	105.4
TkA04G355490	`PF03845`	Spore_permease	116	189	0.002	17.7
TkA04G355490	`PF03845`	Spore_permease	244	358	0.002	17.7
TkA04G355490	`PF13301`	DUF4079	396	512	0.69	10.8
TkA04G355490	`PF03845`	Spore_permease	431	477	0.002	17.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SHH0`	Arabidopsis thaliana	sp\|Q9SHH0\|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar	69.700%	Swiss-Prot	High
`O64759`	Arabidopsis thaliana	sp\|O64759\|CAAT5_ARATH Cationic amino acid transporter 5	60.400%	Swiss-Prot	High
`Q84MA5`	Arabidopsis thaliana	sp\|Q84MA5\|CAAT1_ARATH Cationic amino acid transporter 1	54.100%	Swiss-Prot	High
`Q9LZ20`	Arabidopsis thaliana	sp\|Q9LZ20\|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic	40.700%	Swiss-Prot	Medium
`Q9SQZ0`	Arabidopsis thaliana	sp\|Q9SQZ0\|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic	40.400%	Swiss-Prot	Medium

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