LXL04_037829 | RubberDandelionOmics

Gene overview

LXL04_037829

Reference: OH-1004 Chr: Chr09 Coordinates: 22237293-22240381 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2148 bp · LXL04_037829|LXL04_037829|OH1004|cDNA

ATGAGAATCCCGAATCAATCGCTCCATGAATCCCAATCCAATACCGACGACCCACTTATAAACCTCCTCGCTCCGTTAAACCCCCAATCATCCGCCAtcaccaccgccgccgccgccaTGGATCAGCAACCTCAACCACCGAGATCCTACTGGCGATTCAGCAAAAAAGACTTCTACCCCGAACCCTCTTTCCAAAACCTCTCAGCCTACAAGGCCGCGTTCTCGCAAACCCTCCACCGCCTCCGCGACCGCTGCCTCGG...

CDS

Download CDS FASTA

2148 bp · LXL04_037829|LXL04_037829|OH1004|CDS

ATGAGAATCCCGAATCAATCGCTCCATGAATCCCAATCCAATACCGACGACCCACTTATAAACCTCCTCGCTCCGTTAAACCCCCAATCATCCGCCATCACCACCGCCGCCGCCGCCATGGATCAGCAACCTCAACCACCGAGATCCTACTGGCGATTCAGCAAAAAAGACTTCTACCCCGAACCCTCTTTCCAAAACCTCTCAGCCTACAAGGCCGCGTTCTCGCAAACCCTCCACCGCCTCCGCGACCGCTGCCTCGG...

Protein

Download Protein FASTA

715 aa · LXL04_037829|LXL04_037829|OH1004|PROTEIN

MRIPNQSLHESQSNTDDPLINLLAPLNPQSSAITTAAAAMDQQPQPPRSYWRFSKKDFYPEPSFQNLSAYKAAFSQTLHRLRDRCLGRSTDATELIELKKQSENEMRKCLTWVDLIWLGFGSVVGSGIFTITGLEARNDAGPSIVLSYALSGLSALFSVFCYTEFAVEIPIAGGSFSFLRVELGDFIAFIAAGNILLEAVAGAAGLARSFSSYFASMFSSNPDILRIRIDSFPEGFNLLDPIAVAILFIANMVAMRGTKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037829`
TK1151 ID	TkA04G355490
OH-1004 ID	LXL04_037829
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.200
Protein coverage (%)	TK1151 91.622 / OH-1004 71.888 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_037829

Location Chr09:22237293-22240381 (+)

Description Similar to CAT8: Cationic amino acid transporter 8, vacuolar

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17120`	Permease involved in the transport of the cationic neutral or acidic amino acids.	Molecular and functional characterization of a family of amino acid transporters from Arabidopsis.2004 · DOI: 10.1104/pp.104.045278
`At2g34960`	High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, and, to a lower extent, citrulline and glutamate).	Molecular and functional characterization of a family of amino acid transporters from Arabidopsis.2004 · DOI: 10.1104/pp.104.045278
`At4g21120`	High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, lysine, histidine, citrulline, valine, and glutamate).	No verified direct reference in this release
`At5g04770`	Permease involved in the transport of the cationic neutral or acidic amino acids.	Molecular and functional characterization of a family of amino acid transporters from Arabidopsis.2004 · DOI: 10.1104/pp.104.045278
`At3g10600`	Permease involved in the transport of the cationic amino acids.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037829 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006865 amino acid transport Biological Process

GO:0009624 response to nematode Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G17120

ath:AT2G34960

ath:AT3G10600

ath:AT4G21120

ath:AT5G04770

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.435

Rank 1 · LXL04_037829 · OH-1004

Lysosome / Vacuole0.268

Rank 2 · LXL04_037829 · OH-1004

Endoplasmic reticulum0.185

Rank 3 · LXL04_037829 · OH-1004

Cytoplasm0.096

Rank 4 · LXL04_037829 · OH-1004

Golgi apparatus0.074

Rank 5 · LXL04_037829 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13520.13AA_permease_2110-512 aa

PF00324.28AA_permease115-510 aa

PF13906.13AA_permease_C548-580 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037829	`PF13520.13`	AA_permease_2	110	512	2.3e-51	175.8
LXL04_037829	`PF00324.28`	AA_permease	115	510	2.9e-30	106.1
LXL04_037829	`PF13906.13`	AA_permease_C	548	580	5.7e-08	33.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SHH0`	Arabidopsis thaliana	Cationic amino acid transporter 8, vacuolar	66.790%	Swiss-Prot	strong database homology
`O64759`	Arabidopsis thaliana	Cationic amino acid transporter 5	59.559%	Swiss-Prot	strong database homology
`Q84MA5`	Arabidopsis thaliana	Cationic amino acid transporter 1	53.244%	Swiss-Prot	strong database homology
`Q9LZ20`	Arabidopsis thaliana	Cationic amino acid transporter 6, chloroplastic	38.210%	Swiss-Prot	moderate database homology
`Q9SQZ0`	Arabidopsis thaliana	Cationic amino acid transporter 7, chloroplastic	40.000%	Swiss-Prot	moderate database homology

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