TkA04G350990 | RubberDandelionOmics

Gene overview

TkA04G350990

Reference: TK1151 Chr: Chr04 Coordinates: 88577339-88578198 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

321 bp · TkA04G350990|TK1151|cDNA

ATGAGTTCCAACATAATGCTGCGACATCAAGTAGTGAAGGTCATAAGAAGGTATTTAGAAGACGTACATGGTTTTGTAGAGACTGAGACTCCAATACTCTCTAGGTCTAACCTTGAAGGTGCTCGTGATTATTTAGTTCCATCAAGAGTTCAGCCACTTTATGAAGCCAGGAACGTTCTATGCATTACCTCAAAGTCCACAATTCTTCAAGCAAATGCTAATGAGCAAGTAATCGATGAACTTGATCGAGCTGTAGTAAC...

CDS

Download CDS FASTA

321 bp · TkA04G350990|TK1151|CDS

ATGAGTTCCAACATAATGCTGCGACATCAAGTAGTGAAGGTCATAAGAAGGTATTTAGAAGACGTACATGGTTTTGTAGAGACTGAGACTCCAATACTCTCTAGGTCTAACCTTGAAGGTGCTCGTGATTATTTAGTTCCATCAAGAGTTCAGCCACTTTATGAAGCCAGGAACGTTCTATGCATTACCTCAAAGTCCACAATTCTTCAAGCAAATGCTAATGAGCAAGTAATCGATGAACTTGATCGAGCTGTAGTAAC...

Protein

Download Protein FASTA

106 aa · TkA04G350990|TK1151|PROTEIN

MSSNIMLRHQVVKVIRRYLEDVHGFVETETPILSRSNLEGARDYLVPSRVQPLYEARNVLCITSKSTILQANANEQVIDELDRAVVTVKKGEVDVLTIAPEYAFGL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G350990`
TK1151 ID	TkA04G350990
OH-1004 ID	LXL04_017292
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.400
Protein coverage (%)	TK1151 49.057 / OH-1004 7.773 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G350990

Location Chr04:88577339-88578198 (-)

Description Similar to At4g33760: Aspartate--tRNA ligase, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33760`	Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017292 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006422 aspartyl-tRNA aminoacylation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003676 nucleic acid binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0004815 aspartate-tRNA ligase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0050560 aspartate-tRNA(Asn) ligase activity Molecular Function

KEGG gene cross-reference

ana:all2436

ath:AT4G33760

ava:Ava_0247

npu:Npun_F3458

ter:Tery_2354

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.517

Rank 1 · TkA04G350990 · TK1151

Nucleus0.391

Rank 2 · TkA04G350990 · TK1151

Mitochondrion0.068

Rank 3 · TkA04G350990 · TK1151

Plastid0.053

Rank 4 · TkA04G350990 · TK1151

Extracellular0.047

Rank 5 · TkA04G350990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00152tRNA-synt_21-54 aa

PF00254FKBP_C74-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G350990	`PF00152`	tRNA-synt_2	1	54	5.8e-12	46.0
TkA04G350990	`PF00254`	FKBP_C	74	105	0.00027	21.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JJT9`	Arabidopsis thaliana	sp\|F4JJT9\|SYDM_ARATH Aspartate--tRNA ligase, chloroplastic/mitochondrial	78.400%	Swiss-Prot	Low

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