TkA04G348130 | RubberDandelionOmics

Gene overview

TkA04G348130

Reference: TK1151 Chr: Chr04 Coordinates: 87948828-87949569 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

660 bp · TkA04G348130|TK1151|cDNA

ATGGTACGAGCAACTCCACCACCAAATCCACCACCTCACCAAAGCCACCCGGTCACCCACCACCGACGACGACGACCACCAACTCACCCAACTCGTCAACAAACCATGTTCCACTTCGTCGAGTACTACCGAGTCAAGTCCCTCGCCGCCAACCAAGACGTCCTCTCAATCTTCTCCGCTCGGTGGTCCACCACTCTCGAGCGCTCCCTCCACTGGATCGCCGGGTGGCGACCCACCACCGCGTTTCACCTCATTTACAC...

CDS

Download CDS FASTA

660 bp · TkA04G348130|TK1151|CDS

ATGGTACGAGCAACTCCACCACCAAATCCACCACCTCACCAAAGCCACCCGGTCACCCACCACCGACGACGACGACCACCAACTCACCCAACTCGTCAACAAACCATGTTCCACTTCGTCGAGTACTACCGAGTCAAGTCCCTCGCCGCCAACCAAGACGTCCTCTCAATCTTCTCCGCTCGGTGGTCCACCACTCTCGAGCGCTCCCTCCACTGGATCGCCGGGTGGCGACCCACCACCGCGTTTCACCTCATTTACAC...

Protein

Download Protein FASTA

219 aa · TkA04G348130|TK1151|PROTEIN

MVRATPPPNPPPHQSHPVTHHRRRRPPTHPTRQQTMFHFVEYYRVKSLAANQDVLSIFSARWSTTLERSLHWIAGWRPTTAFHLIYTESSILFESRILDILHGIRTGDLGDLSPAQFTRVSELQCETVQQENAITDLMSEWQQDEASELIGGTCGDLDKKIGRLVQIVQKADELRLRTLKAVVELLTPQQAVEFLIAAAQLHFGIHRWGLNHDRERAEK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G348130`
TK1151 ID	TkA04G348130
OH-1004 ID	LXL04_039708
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	98.400
Protein coverage (%)	TK1151 84.932 / OH-1004 81.498 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G348130

Location Chr04:87948828-87949569 (-)

Description Similar to DOGL3: Protein DOG1-like 3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g18690`	Protein DOG1-like 3.	No verified direct reference in this release
`At4g18680`	Protein DOG1-like 2.	No verified direct reference in this release
`At4g18650`	Protein DOG1-like 4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039708 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0010162 seed dormancy process Biological Process

GO:0010182 sugar mediated signaling pathway Biological Process

GO:2000033 regulation of seed dormancy process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0042802 identical protein binding Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT4G18650

ath:AT4G18660

ath:AT4G18680

ath:AT4G18690

ath:AT5G45830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.484

Rank 1 · TkA04G348130 · TK1151

Cytoplasm0.478

Rank 2 · TkA04G348130 · TK1151

Plastid0.076

Rank 3 · TkA04G348130 · TK1151

Cell membrane0.068

Rank 4 · TkA04G348130 · TK1151

Endoplasmic reticulum0.062

Rank 5 · TkA04G348130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14144DOG133-87 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G348130	`PF14144`	DOG1	33	87	1.1e-21	77.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q58FV0`	Arabidopsis thaliana	sp\|Q58FV0\|DOGL3_ARATH Protein DOG1-like 3	26.900%	Swiss-Prot	Low
`Q9SN45`	Arabidopsis thaliana	sp\|Q9SN45\|DOGL2_ARATH Protein DOG1-like 2	30.800%	Swiss-Prot	Medium
`Q84JC2`	Arabidopsis thaliana	sp\|Q84JC2\|DOGL4_ARATH Protein DOG1-like 4	31.600%	Swiss-Prot	Medium

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