TkA04G346960 | RubberDandelionOmics

Gene overview

TkA04G346960

Reference: TK1151 Chr: Chr04 Coordinates: 87646499-87647680 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1083 bp · TkA04G346960|TK1151|cDNA

ATGGCTTCTTCTCTCTCCCTTATCCTTTTCTGTTTCATCATCCGACCATTCTCTATCTCCACCGCCGTTGTTCCTCCCTCCGCCACTTTCAGGTACGTCAACCAAGGCGAATTTAGTAGTGTCACCGAAAACGAATACAACATAGCCGAATACGACCCAACCTATCTTACTATCCCTCCCTTCGTCTTCCCTTTCCAGCTATGTTTCTACAACACCACCCCCGGCGCCTACACTCTCGCTCTCCGAATGGGTATCAGAGT...

CDS

Download CDS FASTA

1083 bp · TkA04G346960|TK1151|CDS

ATGGCTTCTTCTCTCTCCCTTATCCTTTTCTGTTTCATCATCCGACCATTCTCTATCTCCACCGCCGTTGTTCCTCCCTCCGCCACTTTCAGGTACGTCAACCAAGGCGAATTTAGTAGTGTCACCGAAAACGAATACAACATAGCCGAATACGACCCAACCTATCTTACTATCCCTCCCTTCGTCTTCCCTTTCCAGCTATGTTTCTACAACACCACCCCCGGCGCCTACACTCTCGCTCTCCGAATGGGTATCAGAGT...

Protein

Download Protein FASTA

360 aa · TkA04G346960|TK1151|PROTEIN

MASSLSLILFCFIIRPFSISTAVVPPSATFRYVNQGEFSSVTENEYNIAEYDPTYLTIPPFVFPFQLCFYNTTPGAYTLALRMGIRVSRSMFRWVWEANRGNPVGENATFSLTSDGNLVLAHPYGRIAWQTNTANKGVVGFAILETGNIVLRDSKGSFIWQSFDSATNTLLFGQYLRIGGPTKLVSRASAMNNVNGFYCFVLESKRLAMYYKTTMRYWSSTFPELNSSNVTIANATLQIGRTEYVQNYFNVLRCRLLNSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G346960`
TK1151 ID	TkA04G346960
OH-1004 ID	LXL04_039762
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	70.200
Protein coverage (%)	TK1151 97.222 / OH-1004 86.468 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G346960

Location Chr04:87646499-87647680 (-)

Description Similar to At1g78850: EP1-like glycoprotein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g78850`	May be involved in a cell-to cell programmed cell death (PCD) signaling mechanism.	No verified direct reference in this release
`At1g78860`	EP1-like glycoprotein 4.	No verified direct reference in this release
`At1g78830`	EP1-like glycoprotein 2.	No verified direct reference in this release
`At1g78820`	EP1-like glycoprotein 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039762 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006833 water transport Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:1904383 response to sodium phosphate Biological Process

GO:1990641 response to iron ion starvation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0048046 apoplast Cellular Component

KEGG gene cross-reference

ath:AT1G78820

ath:AT1G78830

ath:AT1G78850

ath:AT1G78860

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.525

Rank 1 · TkA04G346960 · TK1151

Cell membrane0.167

Rank 2 · TkA04G346960 · TK1151

Endoplasmic reticulum0.127

Rank 3 · TkA04G346960 · TK1151

Cytoplasm0.070

Rank 4 · TkA04G346960 · TK1151

Plastid0.053

Rank 5 · TkA04G346960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453B_lectin95-179 aa

PF01453B_lectin203-230 aa

PF00954S_locus_glycop268-312 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G346960	`PF01453`	B_lectin	95	179	6.4e-17	62.6
TkA04G346960	`PF01453`	B_lectin	203	230	6.4e-17	62.6
TkA04G346960	`PF00954`	S_locus_glycop	268	312	0.0028	18.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVA4`	Arabidopsis thaliana	sp\|Q9ZVA4\|EP1L3_ARATH EP1-like glycoprotein 3	43.200%	Swiss-Prot	Medium
`Q9ZVA5`	Arabidopsis thaliana	sp\|Q9ZVA5\|EP1L4_ARATH EP1-like glycoprotein 4	42.500%	Swiss-Prot	Medium
`Q9ZVA2`	Arabidopsis thaliana	sp\|Q9ZVA2\|EP1L2_ARATH EP1-like glycoprotein 2	40.500%	Swiss-Prot	Medium
`Q9ZVA1`	Arabidopsis thaliana	sp\|Q9ZVA1\|EP1L1_ARATH EP1-like glycoprotein 1	40.600%	Swiss-Prot	Medium

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