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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G314630
Reference: TK1151 Chr: Chr04 Coordinates: 79299290-79301722 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2433 bp · TkA04G314630|TK1151|cDNA

ATGAGGAAGCTTCTGGAAATCTTGATTGGTGATGATGTCGGAAGGACTGCGGTGTGGGGTAAGGGTGGGATAGGGAAGACGACTTTAGTCAAGAATTTGGTCAATCATTTGTGTAAATCATCTCCAAGTTGTTTTAATCTTGTGATATGGGTCCAAGTCACTCGCAATCTGGATCTGAATGCCATTCAGATCCAAATTGCGAAGAGGATTCATGTAAAAGTGGAAGCAGAAGACACGACTCACATCTTAGGTAACAAAAT...

CDS

Download CDS FASTA

2433 bp · TkA04G314630|TK1151|CDS

ATGAGGAAGCTTCTGGAAATCTTGATTGGTGATGATGTCGGAAGGACTGCGGTGTGGGGTAAGGGTGGGATAGGGAAGACGACTTTAGTCAAGAATTTGGTCAATCATTTGTGTAAATCATCTCCAAGTTGTTTTAATCTTGTGATATGGGTCCAAGTCACTCGCAATCTGGATCTGAATGCCATTCAGATCCAAATTGCGAAGAGGATTCATGTAAAAGTGGAAGCAGAAGACACGACTCACATCTTAGGTAACAAAAT...

Protein

Download Protein FASTA

810 aa · TkA04G314630|TK1151|PROTEIN

MRKLLEILIGDDVGRTAVWGKGGIGKTTLVKNLVNHLCKSSPSCFNLVIWVQVTRNLDLNAIQIQIAKRIHVKVEAEDTTHILGNKILRRLKTRLDANRCGKILLILDDVWEKIDLYAVGIPSVCKILLTTRSFDVCRDMSVDVPFELNLMSEEDAWNLFVQSAGTILSLDNGKQSPARKIVASCRGLPLAIKTLGKSLRDTPQTAIWRNTYLRWRCSSPLFKNIEKDIFRPLSLSYHSLPSKILQQCFLYCSLYPASFQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G314630
TK1151 IDTkA04G314630
OH-1004 IDLXL04_037510
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 84.200
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G314630
LocationChr04:79299290-79301722 (+)
DescriptionSimilar to At4g27190: Disease resistance protein At4g27190
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27190 Disease resistance protein. No verified direct reference in this release
At4g27220 Probable disease resistance protein. No verified direct reference in this release
At4g26090 Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. No verified direct reference in this release
At1g12220 Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. No verified direct reference in this release
At1g61180 Involved in disease resistance via the salicylic acid (SA) signaling pathway. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037510 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0006952 defense response Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0012501 programmed cell death Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:2000377 regulation of reactive oxygen species metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G12220
ath:AT1G12280
ath:AT4G26090
ath:AT4G27190
ath:AT4G27220
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.426
Rank 1 · TkA04G314630 · TK1151
Nucleus0.313
Rank 2 · TkA04G314630 · TK1151
Cell membrane0.301
Rank 3 · TkA04G314630 · TK1151
Endoplasmic reticulum0.084
Rank 4 · TkA04G314630 · TK1151
Lysosome / Vacuole0.040
Rank 5 · TkA04G314630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00931NB-ARC2-164 aa
PF01637ATPase_215-114 aa
PF13401AAA_2216-110 aa
PF13479AAA_2416-37 aa
PF00142Fer4_NifH16-39 aa
PF13191AAA_1617-110 aa
PF05729NACHT17-72 aa
PF25201nSTAND617-77 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G314630PF00931NB-ARC21646.3e-30104.7
TkA04G314630PF01637ATPase_2151140.004117.7
TkA04G314630PF13401AAA_22161103.6e-0628.0
TkA04G314630PF13479AAA_2416370.1912.1
TkA04G314630PF00142Fer4_NifH16390.2211.7
TkA04G314630PF13191AAA_16171100.0005121.3
TkA04G314630PF05729NACHT17720.001419.2
TkA04G314630PF25201nSTAND617770.2212.2
TkA04G314630PF00910RNA_helicase18420.1413.4
TkA04G314630PF01637ATPase_21471940.004117.7
TkA04G314630PF23559WHD_DRP2543211.1e-0835.7
TkA04G314630PF25201nSTAND63103290.2212.2
TkA04G314630PF23952LRR_EndoS3503720.0004121.3
TkA04G314630PF12799LRR_43523846.2e-1349.2
TkA04G314630PF23598LRR_143685478e-1142.0
TkA04G314630PF13516LRR_63683810.3511.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9T048Arabidopsis thalianasp|Q9T048|DRL27_ARATH Disease resistance protein At4g2719036.600%Swiss-ProtMedium
O81825Arabidopsis thalianasp|O81825|DRL28_ARATH Probable disease resistance protein At4g2722035.200%Swiss-ProtMedium
Q42484Arabidopsis thalianasp|Q42484|RPS2_ARATH Disease resistance protein RPS226.300%Swiss-ProtLow
O64973Arabidopsis thalianasp|O64973|RPS5_ARATH Disease resistance protein RPS529.100%Swiss-ProtLow
Q940K0Arabidopsis thalianasp|Q940K0|UNI_ARATH Disease resistance protein UNI28.600%Swiss-ProtLow

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