TkA04G314530 | RubberDandelionOmics

Gene overview

TkA04G314530

Reference: TK1151 Chr: Chr04 Coordinates: 79262337-79264033 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1374 bp · TkA04G314530|TK1151|cDNA

GTTACAATTCTCTAATCCGTTTTCTTTAATGGACGATCTTTTCAGTAAGATAAAGCAACATTTCAATGGTACTTGGGACGCTGTGGAGTCTGATAAGGCAACCTTCGAGTCCATAGTGATGAGACTTCCCATCAAAAGCATATTAACATTCAAATCCATATCAAAATTCTGGTACAAGATAATGTCCACAAAGGATTTCATCGTAATGCACCGATTTTGGTCCAAAAAAAACACCAAACTCTTCACCTTCTATGATGCCG...

CDS

Download CDS FASTA

1155 bp · TkA04G314530|TK1151|CDS

ATGGACGATCTTTTCAGTAAGATAAAGCAACATTTCAATGGTACTTGGGACGCTGTGGAGTCTGATAAGGCAACCTTCGAGTCCATAGTGATGAGACTTCCCATCAAAAGCATATTAACATTCAAATCCATATCAAAATTCTGGTACAAGATAATGTCCACAAAGGATTTCATCGTAATGCACCGATTTTGGTCCAAAAAAAACACCAAACTCTTCACCTTCTATGATGCCGGCGATCTTGATGACGGTATAGTTCGTGA...

Protein

Download Protein FASTA

384 aa · TkA04G314530|TK1151|PROTEIN

MDDLFSKIKQHFNGTWDAVESDKATFESIVMRLPIKSILTFKSISKFWYKIMSTKDFIVMHRFWSKKNTKLFTFYDAGDLDDGIVREMHLMEPNGTYSESYMIPGFETLHNPILISSFNGLICCVNYMTPCRKLHDAEVRICNPATRKVLLLPNSHLSAYMPIFGVLYSNKYHMYKVFKFFSDLGHYHMGYSQCEVYSSKTGEWKPIGRISKHPLMNPTRPLVADHVCVNEKLYIFIGDDVEFDMPSAILMVDMDCNFYE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G314530`
TK1151 ID	TkA04G314530
OH-1004 ID	LXL04_037504
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.700
Protein coverage (%)	TK1151 98.698 / OH-1004 78.144 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G314530

Location Chr04:79262337-79264033 (-)

Description Similar to At5g49610: F-box protein At5g49610

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30790`	F-box protein At1g30790.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037504 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT4G04690

ath:AT5G15660

ath:AT5G49610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.527

Rank 1 · TkA04G314530 · TK1151

Nucleus0.389

Rank 2 · TkA04G314530 · TK1151

Cell membrane0.124

Rank 3 · TkA04G314530 · TK1151

Endoplasmic reticulum0.096

Rank 4 · TkA04G314530 · TK1151

Lysosome / Vacuole0.063

Rank 5 · TkA04G314530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box28-57 aa

PF08268FBA_342-76 aa

PF24750b-prop_At3g26010-like100-297 aa

PF08268FBA_3113-320 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G314530	`PF00646`	F-box	28	57	0.017	15.8
TkA04G314530	`PF08268`	FBA_3	42	76	7.7e-13	48.9
TkA04G314530	`PF24750`	b-prop_At3g26010-like	100	297	3.9e-05	23.6
TkA04G314530	`PF08268`	FBA_3	113	320	7.7e-13	48.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SY20`	Arabidopsis thaliana	sp\|Q9SY20\|FB20_ARATH F-box protein At1g30790	27.400%	Swiss-Prot	Low

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