TkA04G314210 | RubberDandelionOmics

Gene overview

TkA04G314210

Reference: TK1151 Chr: Chr04 Coordinates: 79141958-79148470 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3159 bp · TkA04G314210|TK1151|cDNA

ATAGTACCCTGATGATGGTCTGATCGAAGAATTCGGTTACTATTTTCATTCGCACACGTTTCTGCAAAATTCGATTACGATATTATTGAAGTTCATAATCAAAACTATTGCACAATTTCATAACTTCCTGCTAAGTAGTTTGTTTCCGCTGATCCTATCAAGACAAAATGGAGGACGTATTCGTTGCCATCGTTTCGATGCTTCTCATTGTTGCTTTAATTCCACTTTACCTATGGCGACGACGTCAGGTCCCGCAGTCT...

CDS

Download CDS FASTA

1968 bp · TkA04G314210|TK1151|CDS

ATGATCACATTCCCATGGAAACCATGGCTTCTCCTGTTTCTTTTCCACGTATGTAAAGCTCAAGACAATGGAGAAACTCCAGTCACGTTACCGAAGGACGCCGACACCTGTAACGGAATCTTCTTACAATACAACTTCGATTCACGACAGAAAGAATACCCGCATCTGAAGAACGCCACCGCACAATCATGGGCGTTCAAGTCGCAGTTAAACGTCATCAACACCGGGGCCACCGAGCTGAAAACATGGCAGGCGTTTAT...

Protein

Download Protein FASTA

655 aa · TkA04G314210|TK1151|PROTEIN

MITFPWKPWLLLFLFHVCKAQDNGETPVTLPKDADTCNGIFLQYNFDSRQKEYPHLKNATAQSWAFKSQLNVINTGATELKTWQAFIGFQHREILVSVDGATILNGDSFPTKVGKNGTHLTGYPQADLRTAIDTAGDLGQMAAKVKIKGTMFGVRVGGNVMPTSIKLENEGFKCPKATTKGRQSMHVCCTKDPKFKPKKKLLKFFPRRRADLSFTYDVIQSFAGNYMAQVTIDNNHPLGRLDHWNLTFEWMRNEFIYDMR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G314210`
TK1151 ID	TkA04G314210
OH-1004 ID	LXL04_037498
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.542 / OH-1004 99.694 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G314210

Location Chr04:79141958-79148470 (-)

Description Similar to COBL10: COBRA-like protein 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g20580`	Involved in the deposition of apical pectin cap and cellulose microfibrils in pollen tubes.	Arabidopsis COBRA-LIKE 10, a GPI-anchored protein, mediates directional growth of pollen tubes.2013 · DOI: 10.1111/tpj.12139
`At4g27110`	Involved in the deposition of apical pectin cap and cellulose microfibrils in pollen tubes.	No verified direct reference in this release
`At4g16120`	COBRA-like protein 7.	No verified direct reference in this release
`At3g16860`	COBRA-like protein 8.	No verified direct reference in this release
`At5g49270`	COBRA-like protein 9.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0103200`	Substrate adapter for ufmylation, the covalent attachment of the ubiquitin-like modifier UFM1 to substrate proteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037498 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009860 pollen tube growth Biological Process

GO:0009932 cell tip growth Biological Process

GO:0010053 root epidermal cell differentiation Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010215 cellulose microfibril organization Biological Process

GO:0048765 root hair cell differentiation Biological Process

GO:0048768 root hair cell tip growth Biological Process

GO:0052324 plant-type cell wall cellulose biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT3G16860

ath:AT3G20580

ath:AT4G16120

ath:AT4G27110

ath:AT5G49270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.600

Rank 1 · TkA04G314210 · TK1151

Extracellular0.241

Rank 2 · TkA04G314210 · TK1151

Endoplasmic reticulum0.102

Rank 3 · TkA04G314210 · TK1151

Cytoplasm0.069

Rank 4 · TkA04G314210 · TK1151

Golgi apparatus0.066

Rank 5 · TkA04G314210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25079COB_C43-118 aa

PF00553CBM_265-105 aa

PF04833COBRA_N81-102 aa

PF04833COBRA_N183-193 aa

PF25079COB_C213-251 aa

PF00553CBM_2215-258 aa

PF04833COBRA_N226-405 aa

PF25079COB_C413-623 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G314210	`PF25079`	COB_C	43	118	2.1e-99	332.4
TkA04G314210	`PF00553`	CBM_2	65	105	7.7e-05	23.7
TkA04G314210	`PF04833`	COBRA_N	81	102	7.5e-61	205.6
TkA04G314210	`PF04833`	COBRA_N	183	193	7.5e-61	205.6
TkA04G314210	`PF25079`	COB_C	213	251	2.1e-99	332.4
TkA04G314210	`PF00553`	CBM_2	215	258	7.7e-05	23.7
TkA04G314210	`PF04833`	COBRA_N	226	405	7.5e-61	205.6
TkA04G314210	`PF25079`	COB_C	413	623	2.1e-99	332.4
TkA04G314210	`PF00553`	CBM_2	493	530	7.7e-05	23.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LJU0`	Arabidopsis thaliana	sp\|Q9LJU0\|CBL10_ARATH COBRA-like protein 10	60.600%	Swiss-Prot	High
`Q9T045`	Arabidopsis thaliana	sp\|Q9T045\|CBL11_ARATH COBRA-like protein 11	56.800%	Swiss-Prot	High
`Q8GZ17`	Arabidopsis thaliana	sp\|Q8GZ17\|COBL7_ARATH COBRA-like protein 7	51.400%	Swiss-Prot	High
`Q9LIB6`	Arabidopsis thaliana	sp\|Q9LIB6\|COBL8_ARATH COBRA-like protein 8	48.700%	Swiss-Prot	Medium
`Q9FJ13`	Arabidopsis thaliana	sp\|Q9FJ13\|COBL9_ARATH COBRA-like protein 9	49.600%	Swiss-Prot	Medium
`Q8LH03`	Oryza sativa subsp. japonica	sp\|Q8LH03\|DDRGK_ORYSJ DDRGK domain-containing protein 1	68.800%	Swiss-Prot	High

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