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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G307110
Reference: TK1151 Chr: Chr04 Coordinates: 77522625-77523553 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

770 bp · TkA04G307110|TK1151|cDNA

CCATTTCTCCCATTCCTCTACGTTATTCCCACCTCCACCGACCCCTCCTTCCTCCGGCGGCTTCCTCCGGCAACCACCACGGCGATGGAGACTCTTCTAAATGTCATCAACAGAATCTTCACGGCGTTGCTCACTTGCGCCTTCGCTTCTGGAGGAGCGGTGATCGGGATAATTACCGGCGCAATCAAAGGGCAAACGACGGAAACGGGGCTAGTTCGTGGAGCTGGTGTAGGTGCAGTCACTGGTGCGATCACAGCTTT...

CDS

Download CDS FASTA

585 bp · TkA04G307110|TK1151|CDS

ATGGAGACTCTTCTAAATGTCATCAACAGAATCTTCACGGCGTTGCTCACTTGCGCCTTCGCTTCTGGAGGAGCGGTGATCGGGATAATTACCGGCGCAATCAAAGGGCAAACGACGGAAACGGGGCTAGTTCGTGGAGCTGGTGTAGGTGCAGTCACTGGTGCGATCACAGCTTTGCAGATCATGGATATGATCGCTAATGGCGAACCATTCTCGAAGGTCGCATTGTTGCATAGTCTTGTAAACGGGAAAGTGTTCAT...

Protein

Download Protein FASTA

194 aa · TkA04G307110|TK1151|PROTEIN

METLLNVINRIFTALLTCAFASGGAVIGIITGAIKGQTTETGLVRGAGVGAVTGAITALQIMDMIANGEPFSKVALLHSLVNGKVFIEWVSPAVLKAYQWQTSAIEMSLVDMFDTEINGERGLSDDDLNRLPKCQFANRKGEECKHTNCAICLQDFENEEEGRELPNCGHGFHLDCIDEWLIRQGSCPICRRDV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G307110
TK1151 IDTkA04G307110
OH-1004 IDLXL04_037427
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.900
Protein coverage (%)TK1151 100.000 / OH-1004 86.607
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G307110
LocationChr04:77522625-77523553 (+)
DescriptionSimilar to ATL27: NEP1-interacting protein-like 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g66070 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At2g17730 Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane. No verified direct reference in this release
At4g35840 Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane. No verified direct reference in this release
At1g74410 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At2g17450 E3 ubiquitin-protein ligase that possess E3 ubiquitin ligase activity in vitro and mediates protein monoubiquitination.
Ligand-induced monoubiquitination of BIK1 regulates plant immunity.2020 · DOI: 10.1038/s41586-020-2210-3

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037427 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006513 protein monoubiquitination Biological Process
GO:0006952 defense response Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0042170 plastid membrane Cellular Component
KEGG gene cross-reference
ath:AT1G74410
ath:AT2G17450
ath:AT2G17730
ath:AT4G35840
ath:AT5G66070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.288
Rank 1 · TkA04G307110 · TK1151
Cytoplasm0.268
Rank 2 · TkA04G307110 · TK1151
Nucleus0.179
Rank 3 · TkA04G307110 · TK1151
Mitochondrion0.167
Rank 4 · TkA04G307110 · TK1151
Golgi apparatus0.142
Rank 5 · TkA04G307110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17647DUF551818-66 aa
PF06897DUF126921-64 aa
PF13436Gly-zipper_OmpA21-56 aa
PF13441Gly-zipper_YMGG22-57 aa
PF13488Gly-zipper_Omp23-56 aa
PF10439Bacteriocin_IIc23-56 aa
PF06897DUF126924-43 aa
PF22191IBR_1132-156 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G307110PF17647DUF551818660.004917.7
TkA04G307110PF06897DUF126921642.09.5
TkA04G307110PF13436Gly-zipper_OmpA21563.88.1
TkA04G307110PF13441Gly-zipper_YMGG22570.0008220.0
TkA04G307110PF13488Gly-zipper_Omp23560.1912.4
TkA04G307110PF10439Bacteriocin_IIc23563.58.4
TkA04G307110PF06897DUF126924432.09.5
TkA04G307110PF22191IBR_11321561.29.8
TkA04G307110PF08746zf-RING-like1401900.9410.4
TkA04G307110PF00097zf-C3HC41421581.8e-0731.6
TkA04G307110PF17123zf-RING_111431471.7e-1041.1
TkA04G307110PF13923zf-C3HC4_21431549.7e-0832.4
TkA04G307110PF14634zf-RING_51431566.8e-0729.9
TkA04G307110PF13445zf-RING_UBOX1431551.5e-0628.8
TkA04G307110PF15227zf-C3HC4_41431640.02915.2
TkA04G307110PF14570zf-RING_41431630.04814.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FKX5Arabidopsis thalianasp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 139.900%Swiss-ProtMedium
Q8GT74Arabidopsis thalianasp|Q8GT74|NIP2_ARATH NEP1-interacting protein 236.600%Swiss-ProtMedium
Q8GT75Arabidopsis thalianasp|Q8GT75|NIP1_ARATH NEP1-interacting protein 137.200%Swiss-ProtMedium
Q8LBA0Arabidopsis thalianasp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 236.800%Swiss-ProtMedium
O22755Arabidopsis thalianasp|O22755|ATL44_ARATH Probable E3 ubiquitin-protein ligase ATL4447.400%Swiss-ProtLow

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