TkA04G304170 | RubberDandelionOmics

Gene overview

TkA04G304170

Reference: TK1151 Chr: Chr04 Coordinates: 76806910-76810264 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2264 bp · TkA04G304170|TK1151|cDNA

TATGGCCTCCTTTTTGTCTAGATTGTTTATTGCTTCCCACATATCCCCTCAGCCTCAAACTCCAGATTTATTTGCAAAGGAGATGTATGTATTTTGAACCATAATGCCACCCTTCCCACCACAAAACAAAGCCATAAATCATAACATAAATACTATACCGGTTTTGTACACATGTGTATGCTAGTCTATGCTAGCTATATAAGAAATAATTATTCTTCCAATAATCTCTGAGGTGGTTGCTCAAACCTCATGTCATATAA...

CDS

Download CDS FASTA

1113 bp · TkA04G304170|TK1151|CDS

ATGGCAGTTGCTACTTCCGTCACCGGTGGTGTCCCCACCATGACGACGGCAGTCTTGCTGTGTGTTTTGGTGTTACGAATCACTGCATGCAATGCTCAGGCAGCTGCTCCGGCGGTTTACATGTTCGGAGACTCTTTGGTGGACGTTGGAAACAATAATTTCCTGCCACTTTCACTTGCTAAGGCTGATTTTCCTCATAATGGCGTTGACTTTGCCGCCGGAAAACCTACCGGAAGATTCTCGAACGGAATGAATGCTGC...

Protein

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370 aa · TkA04G304170|TK1151|PROTEIN

MAVATSVTGGVPTMTTAVLLCVLVLRITACNAQAAAPAVYMFGDSLVDVGNNNFLPLSLAKADFPHNGVDFAAGKPTGRFSNGMNAADFIAKKVGLPTSPPYLSLIGSATLPITGVSFASGGGGILNSTGEQFKQVISFAQQLEYFSLVRANAKLVRQLGPAGADVHLSKTLFAIVIGSNDLFAYFTTGSAVSIKYTPQQFVDLMVSTYKGLLKMLYGLGARKVMVTGVGAIGCCPIQRKSNKTGGCNTGLNYWSTKYND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G304170`
TK1151 ID	TkA04G304170
OH-1004 ID	LXL04_037412
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G304170

Location Chr04:76806910-76810264 (-)

Description Similar to At5g55050: GDSL esterase/lipase At5g55050

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g55050`	GDSL esterase/lipase At5g55050.	No verified direct reference in this release
`At5g37690`	GDSL esterase/lipase At5g37690.	No verified direct reference in this release
`At4g16230`	GDSL esterase/lipase At4g16230.	No verified direct reference in this release
`At3g50400`	GDSL esterase/lipase At3g50400.	No verified direct reference in this release
`At5g15720`	GDSL esterase/lipase 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037412 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G74460

ath:AT3G50400

ath:AT4G16230

ath:AT5G37690

ath:AT5G55050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.578

Rank 1 · TkA04G304170 · TK1151

Endoplasmic reticulum0.112

Rank 2 · TkA04G304170 · TK1151

Cell membrane0.110

Rank 3 · TkA04G304170 · TK1151

Lysosome / Vacuole0.089

Rank 4 · TkA04G304170 · TK1151

Cytoplasm0.073

Rank 5 · TkA04G304170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04512Baculo_PEP_N11-34 aa

PF00657Lipase_GDSL39-349 aa

PF04512Baculo_PEP_N145-196 aa

PF04512Baculo_PEP_N180-231 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G304170	`PF04512`	Baculo_PEP_N	11	34	0.1	13.9
TkA04G304170	`PF00657`	Lipase_GDSL	39	349	7.9e-33	115.1
TkA04G304170	`PF04512`	Baculo_PEP_N	145	196	0.1	13.9
TkA04G304170	`PF04512`	Baculo_PEP_N	180	231	0.1	13.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIA1`	Arabidopsis thaliana	sp\|Q9FIA1\|GDL87_ARATH GDSL esterase/lipase At5g55050	44.600%	Swiss-Prot	Medium
`Q9FHQ1`	Arabidopsis thaliana	sp\|Q9FHQ1\|GDL80_ARATH GDSL esterase/lipase At5g37690	39.300%	Swiss-Prot	Medium
`O23470`	Arabidopsis thaliana	sp\|O23470\|GDL64_ARATH GDSL esterase/lipase At4g16230	37.700%	Swiss-Prot	Medium
`Q9M2R9`	Arabidopsis thaliana	sp\|Q9M2R9\|GDL58_ARATH GDSL esterase/lipase At3g50400	37.400%	Swiss-Prot	Medium
`Q8LFJ9`	Arabidopsis thaliana	sp\|Q8LFJ9\|GLIP7_ARATH GDSL esterase/lipase 7	36.100%	Swiss-Prot	Medium

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