LXL04_037412 | RubberDandelionOmics

Gene overview

LXL04_037412

Reference: OH-1004 Chr: Chr09 Coordinates: 10378831-10381296 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1113 bp · LXL04_037412|LXL04_037412|OH1004|cDNA

ATGGCAGTTGCTACTTCCGTCACCGGTGGTGTCCCCACCATGACGACGGCAGTCTTGCTGTGTGTTTTGGTGTTACGAATCACTGCATGCAATGCTCAGGCAGCTGCTCCGGCGGTTTACATGTTCGGAGACTCTTTGGTGGACGTTGGAAACAATAATTTCCTGCCACTTTCACTTGCTAAGGCTGATTTTCCTCATAATGGCGTTGACTTTGCCGCCGGAAAACCTACCGGAAGATTCTCGAACGGAATGAATGCTGC...

CDS

Download CDS FASTA

1113 bp · LXL04_037412|LXL04_037412|OH1004|CDS

ATGGCAGTTGCTACTTCCGTCACCGGTGGTGTCCCCACCATGACGACGGCAGTCTTGCTGTGTGTTTTGGTGTTACGAATCACTGCATGCAATGCTCAGGCAGCTGCTCCGGCGGTTTACATGTTCGGAGACTCTTTGGTGGACGTTGGAAACAATAATTTCCTGCCACTTTCACTTGCTAAGGCTGATTTTCCTCATAATGGCGTTGACTTTGCCGCCGGAAAACCTACCGGAAGATTCTCGAACGGAATGAATGCTGC...

Protein

Download Protein FASTA

370 aa · LXL04_037412|LXL04_037412|OH1004|PROTEIN

MAVATSVTGGVPTMTTAVLLCVLVLRITACNAQAAAPAVYMFGDSLVDVGNNNFLPLSLAKADFPHNGVDFAAGKPTGRFSNGMNAADFIAKKVGLPTSPPYLSLIGSATLPITGVSFASGGGGILNSTGEQFKQVISFAQQLEYFSLVRANAKLVRQLGPAGADVHLSKTLFAIVIGSNDLFAYFTTGSAVSIKYTPQQFVDLMVSTYKGLLKMLYGLGARKVMVTGVGAIGCCPIQRKSNKTGGCNTGLNYWSTKYND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037412`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037412

Location Chr09:10378831-10381296 (-)

Description Similar to At5g55050: GDSL esterase/lipase At5g55050

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g55050`	GDSL esterase/lipase At5g55050.	No verified direct reference in this release
`At5g37690`	GDSL esterase/lipase At5g37690.	No verified direct reference in this release
`At4g16230`	GDSL esterase/lipase At4g16230.	No verified direct reference in this release
`At3g50400`	GDSL esterase/lipase At3g50400.	No verified direct reference in this release
`At1g74460`	GDSL esterase/lipase At1g74460.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037412 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G74460

ath:AT3G50400

ath:AT4G16230

ath:AT5G37690

ath:AT5G55050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.569

Rank 1 · LXL04_037412 · OH-1004

Endoplasmic reticulum0.114

Rank 2 · LXL04_037412 · OH-1004

Cell membrane0.113

Rank 3 · LXL04_037412 · OH-1004

Lysosome / Vacuole0.090

Rank 4 · LXL04_037412 · OH-1004

Cytoplasm0.074

Rank 5 · LXL04_037412 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL39-348 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037412	`PF00657.29`	Lipase_GDSL	39	348	9.8e-32	111.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FIA1`	Arabidopsis thaliana	GDSL esterase/lipase At5g55050	44.957%	Swiss-Prot	moderate database homology
`Q9FHQ1`	Arabidopsis thaliana	GDSL esterase/lipase At5g37690	38.690%	Swiss-Prot	moderate database homology
`O23470`	Arabidopsis thaliana	GDSL esterase/lipase At4g16230	37.158%	Swiss-Prot	moderate database homology
`Q9M2R9`	Arabidopsis thaliana	GDSL esterase/lipase At3g50400	38.592%	Swiss-Prot	moderate database homology
`Q9CA68`	Arabidopsis thaliana	GDSL esterase/lipase At1g74460	35.608%	Swiss-Prot	moderate database homology

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