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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G262860
Reference: TK1151 Chr: Chr04 Coordinates: 66469993-66474801 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1530 bp · TkA04G262860|TK1151|cDNA

TGGTTTGTCCTTGATTATTTGGACTTGAAATCATGACATGTTTTGTTTTTTTAATTCGTGTGGTAGATCATGTCACATGACCTGGATGATGATGCTGATTACATGGCTGATGAACATGAAGTAGAAGATGTAGAAAATCATATTAGTGATGATTTACATGGTGCAGATGATGCAGGTGGTTCAGACTCAGAAATTGATGAACAATATCATATGAATTATAAGTCAGGAGATACATATGCTGCTCAGGCAAGAAGGAAAGG...

CDS

Download CDS FASTA

1173 bp · TkA04G262860|TK1151|CDS

ATGTCACATGACCTGGATGATGATGCTGATTACATGGCTGATGAACATGAAGTAGAAGATGTAGAAAATCATATTAGTGATGATTTACATGGTGCAGATGATGCAGGTGGTTCAGACTCAGAAATTGATGAACAATATCATATGAATTATAAGTCAGGAGATACATATGCTGCTCAGGCAAGAAGGAAAGGAAAGGACATTCAAGGTATTCCATGGGAGAGGCTGAGTATTACCAGGGAACAGTATAGACAAACTAGGCT...

Protein

Download Protein FASTA

390 aa · TkA04G262860|TK1151|PROTEIN

MSHDLDDDADYMADEHEVEDVENHISDDLHGADDAGGSDSEIDEQYHMNYKSGDTYAAQARRKGKDIQGIPWERLSITREQYRQTRLEQYKNYENVPLSGETSQKQCKDTNKGGSFYEFRSNSRSVKSTILHFQLRNLVWATSKHDVYYMSHFSVLHWSSLTCKNSSVLNVAGHVAPHEKHPGSLLEGFNQTQVSTLAVKDNLLVAGGFQGELICKYLDRPGVCYCSRASYDDNAITNAVDIYTTTSGAVHFTASNNDCG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G262860
TK1151 IDTkA04G262860
OH-1004 IDLXL04_033212
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)66.100
Protein coverage (%)TK1151 98.462 / OH-1004 85.294
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G262860
LocationChr04:66469993-66474801 (-)
DescriptionSimilar to SPBC2A9.03: Uncharacterized WD repeat-containing protein C2A9.03 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033212 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005829 cytosol Cellular Component
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ana:alr2800
spo:2540276
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.713
Rank 1 · TkA04G262860 · TK1151
Cytoplasm0.425
Rank 2 · TkA04G262860 · TK1151
Mitochondrion0.033
Rank 3 · TkA04G262860 · TK1151
Cell membrane0.030
Rank 4 · TkA04G262860 · TK1151
Lysosome / Vacuole0.028
Rank 5 · TkA04G262860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21029RMC1_N51-72 aa
PF25175Beta-prop_WDR5108-139 aa
PF21514FimA-like_C115-163 aa
PF23414Beta-prop_EML_2119-163 aa
PF24807WD40_CDC20-Fz123-194 aa
PF29037DSE1_N184-215 aa
PF24805EIF3I190-342 aa
PF24807WD40_CDC20-Fz190-229 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G262860PF21029RMC1_N51720.04614.5
TkA04G262860PF25175Beta-prop_WDR51081397.9e-1349.0
TkA04G262860PF21514FimA-like_C1151630.2611.6
TkA04G262860PF23414Beta-prop_EML_21191635.9e-1143.0
TkA04G262860PF24807WD40_CDC20-Fz1231945.2e-0936.5
TkA04G262860PF29037DSE1_N1842150.0003120.7
TkA04G262860PF24805EIF3I1903421.6e-0938.1
TkA04G262860PF24807WD40_CDC20-Fz1902295.2e-0936.5
TkA04G262860PF01344Kelch_11942180.1912.0
TkA04G262860PF25047Beta-prop_TEP1_2nd1992130.0007819.4
TkA04G262860PF24814WD40_Prp192003891.5e-1661.0
TkA04G262860PF25168Beta-prop_WDR36-Utp21_2nd2283826.9e-0936.1
TkA04G262860PF21514FimA-like_C2282570.2611.6
TkA04G262860PF24817WD40_WDHD1_1st2443524.3e-0730.1
TkA04G262860PF23414Beta-prop_EML_22513815.9e-1143.0
TkA04G262860PF25172Beta-prop_WDR3_2nd2513811.1e-0525.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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