LXL04_033212 | RubberDandelionOmics

Gene overview

LXL04_033212

Reference: OH-1004 Chr: Chr07 Coordinates: 38335946-38338078 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1329 bp · LXL04_033212|LXL04_033212|OH1004|cDNA

ATGCCTCCTCACAACGAAGTTGACCAAATAGACTACATGGCAGAAGAAGGGGACATGTCAGATTTTGCAGATGATGTGGATGCAGATGACAACAATGGTGGAGATAGAAATCTTGATGAATACGATATGCTTACAAAGGTGACGGATACGTCCTCTGCACAAGCAAGGACAGGAAAAGACATTCAGGGAATTCCATGGGAAAGATTGAACATAACAAGAGAAAGTTATAGGCGTACAAGGCTTGAACAATACAGAAACTA...

CDS

Download CDS FASTA

1329 bp · LXL04_033212|LXL04_033212|OH1004|CDS

ATGCCTCCTCACAACGAAGTTGACCAAATAGACTACATGGCAGAAGAAGGGGACATGTCAGATTTTGCAGATGATGTGGATGCAGATGACAACAATGGTGGAGATAGAAATCTTGATGAATACGATATGCTTACAAAGGTGACGGATACGTCCTCTGCACAAGCAAGGACAGGAAAAGACATTCAGGGAATTCCATGGGAAAGATTGAACATAACAAGAGAAAGTTATAGGCGTACAAGGCTTGAACAATACAGAAACTA...

Protein

Download Protein FASTA

442 aa · LXL04_033212|LXL04_033212|OH1004|PROTEIN

MPPHNEVDQIDYMAEEGDMSDFADDVDADDNNGGDRNLDEYDMLTKVTDTSSAQARTGKDIQGIPWERLNITRESYRRTRLEQYRNYENIPLSGDAVDKKCKQKSKGGNYYEFFHNTRSVKPTILHFQLRNLVWATSKHDVYLMSNYSIMHWSSLSQNLTEILNFSGHVAPTEKHAGSLLEGFTQTQISTLAVSDEFLVAGGFQGELACKRLDKQGVSFCTRTTYEDNAITNAIEIYDTLSGGMHFMASNNDCGVREYDM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033212`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_033212`
Location	Chr07:38335946-38338078 (-)
Description	Similar to SPBC2A9.03: Uncharacterized WD repeat-containing protein C2A9.03 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_033212` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0005829 cytosol Cellular Component GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference	ana:alr2800 spo:2540276 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.647

Rank 1 · LXL04_033212 · OH-1004

Cytoplasm0.469

Rank 2 · LXL04_033212 · OH-1004

Lysosome / Vacuole0.037

Rank 3 · LXL04_033212 · OH-1004

Mitochondrion0.033

Rank 4 · LXL04_033212 · OH-1004

Cell membrane0.031

Rank 5 · LXL04_033212 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24817.2WD40_WDHD1_1st242-388 aa

PF25174.2Beta-prop_THOC3243-414 aa

PF25168.2Beta-prop_WDR36-Utp21_2nd243-379 aa

PF25391.2WD40_Gbeta245-380 aa

PF25175.2Beta-prop_WDR5247-415 aa

PF24814.2WD40_Prp19251-385 aa

PF23381.2Beta-prop_IFT122_1st275-422 aa

PF24807.2WD40_CDC20-Fz279-389 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033212	`PF24817.2`	WD40_WDHD1_1st	242	388	2.2e-10	40.9
LXL04_033212	`PF25174.2`	Beta-prop_THOC3	243	414	2.2e-19	70.2
LXL04_033212	`PF25168.2`	Beta-prop_WDR36-Utp21_2nd	243	379	1.1e-09	38.8
LXL04_033212	`PF25391.2`	WD40_Gbeta	245	380	4.6e-09	36.4
LXL04_033212	`PF25175.2`	Beta-prop_WDR5	247	415	5.3e-14	52.9
LXL04_033212	`PF24814.2`	WD40_Prp19	251	385	5.9e-13	49.2
LXL04_033212	`PF23381.2`	Beta-prop_IFT122_1st	275	422	1.2e-15	58.4
LXL04_033212	`PF24807.2`	WD40_CDC20-Fz	279	389	1e-08	35.6
LXL04_033212	`PF25173.2`	Beta-prop_WDR3_1st	281	421	9.5e-11	42.4
LXL04_033212	`PF24796.2`	WDR55	285	402	5.3e-06	26.4
LXL04_033212	`PF24805.2`	EIF3I	301	376	2.7e-09	37.4
LXL04_033212	`PF00400.39`	WD40	304	342	6.5e-16	58.8
LXL04_033212	`PF23414.2`	Beta-prop_EML_2	321	422	2.4e-11	44.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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