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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G254370
Reference: TK1151 Chr: Chr04 Coordinates: 64318068-64321615 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1357 bp · TkA04G254370|TK1151|cDNA

ATTCTCCATAGTTTTGTCCGAAGTAGTTGGTGGAAGCATCTTTTCAACTGCGACCTAATTCAATTCGTACCAGAATATGCACAGACTGCTGTAATAAATCTAAAGCGATTAGGTTGAGATTCCGGTCATCGGAAGTGAAAATCAGAGCAAAATAGTTGTCGTTTTGATCGGAGAGCTGATGTCGGAGAACGGTAGCACGGTTAGTACGGCAAGCGGGCCGGATTTTAACCTACCAAATGAAATTCTGTCGGTTATCCCGA...

CDS

Download CDS FASTA

1020 bp · TkA04G254370|TK1151|CDS

ATGTCGGAGAACGGTAGCACGGTTAGTACGGCAAGCGGGCCGGATTTTAACCTACCAAATGAAATTCTGTCGGTTATCCCGACGGATCCGTACGACCAGTTAGATCTTGCTCGGAAGATCACTTCAATGGCGCTTGCATCGCGCGTTTCTAAATTGGAGTCGGAGGCAGGACGGCTGAGGAATAAGCTGAACGAGAAAGACCGTGTGATAATGGAACTCGAAGATAAAGTCTCCGAGCTTCAGAAAACGTGTCATAACGC...

Protein

Download Protein FASTA

339 aa · TkA04G254370|TK1151|PROTEIN

MSENGSTVSTASGPDFNLPNEILSVIPTDPYDQLDLARKITSMALASRVSKLESEAGRLRNKLNEKDRVIMELEDKVSELQKTCHNAQLRLQMTLQDNSKLAEERDSLAMATKKLGRDLAKLETFKRQLMQSLNENDSSSTQTSTVDIGTYDQSVPRAYPSKEETNGYRKHHSFSGSINGGNIPDDASKHAGQRFSVTPYMSSRVTPTETPKTMSASVSPSRRYSASGATSPTKIQYEGRNGTMSSWYSSSQQSSAGNSP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G254370
TK1151 IDTkA04G254370
OH-1004 IDLXL04_028864
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)40.600
Protein coverage (%)TK1151 95.870 / OH-1004 97.353
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G254370
LocationChr04:64318068-64321615 (+)
DescriptionSimilar to At4g15545: Uncharacterized protein At4g15545
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g15545 Uncharacterized protein At4g15545. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028864 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0080119 ER body organization Biological Process
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005829 cytosol Cellular Component
GO:0010168 ER body Cellular Component
KEGG gene cross-reference
ath:AT4G15545
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.697
Rank 1 · TkA04G254370 · TK1151
Nucleus0.271
Rank 2 · TkA04G254370 · TK1151
Cell membrane0.146
Rank 3 · TkA04G254370 · TK1151
Golgi apparatus0.066
Rank 4 · TkA04G254370 · TK1151
Lysosome / Vacuole0.052
Rank 5 · TkA04G254370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02601Exonuc_VII_L38-135 aa
PF14362DUF440740-146 aa
PF25450Rab11-FIP341-104 aa
PF23649FKBP1542-132 aa
PF27022NAI2_C44-133 aa
PF24245INO80F44-70 aa
PF08702Fib_alpha44-86 aa
PF08614ATG1644-130 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G254370PF02601Exonuc_VII_L381357.06.7
TkA04G254370PF14362DUF4407401461.68.6
TkA04G254370PF25450Rab11-FIP3411040.4811.4
TkA04G254370PF23649FKBP15421320.3511.2
TkA04G254370PF27022NAI2_C441330.05714.2
TkA04G254370PF24245INO80F44700.611.0
TkA04G254370PF08702Fib_alpha44860.710.8
TkA04G254370PF08614ATG16441300.8710.4
TkA04G254370PF07889DUF166444921.39.8
TkA04G254370PF26095CC_Bre1441104.38.4
TkA04G254370PF13851GAS451320.1911.8
TkA04G254370PF05384DegS451291.59.0
TkA04G254370PF06419COG6_N45932.78.9
TkA04G254370PF05266DUF72445949.66.7
TkA04G254370PF30677CCDC18_1st461380.1911.7
TkA04G254370PF14197Cep57_CLD_246826.27.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93W28Arabidopsis thalianasp|Q93W28|Y4554_ARATH Uncharacterized protein At4g1554539.000%Swiss-ProtMedium

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