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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G247260
Reference: TK1151 Chr: Chr04 Coordinates: 62546894-62563042 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3415 bp · TkA04G247260|TK1151|cDNA

ATGACAAAAAGATAATCCTTTTTTCCAATGTTTTTCAATTATATAAGATGTGATAGACTGATAATGTAAAGCAGAAACAATCGACTCAGAGTGCGGATTTGTGCAATGGAATTCCGATTGTACTTTTGCGTGTGCTTGATCATGATGATCATGGCCGCCGTTGCTCAAGCTCAAAACACCACCGATCCAGCTGAAGCGCAAGTTATAAATTCAATGTTCCGTGCATGGGGGATACCAGAAAGCGTAGTAACAAAAATGAG...

CDS

Download CDS FASTA

3099 bp · TkA04G247260|TK1151|CDS

ATGTCAACTACGGATGACAAAAAGTCTACTTACCGTATAGTGCGGATTTGTGCAATGGAATTCCGATTGTACTTTTGCGTGTGCTTGATCATGATGATCATGGCCGCCGTTGCTCAAGCTCAAAACACCACCGATCCAGCTGAAGCGCAAGTTATAAATTCAATGTTCCGTGCATGGGGGATACCAGAAAGCGTAGTAACAAAAATGAGATGGAACATAAGCGGAGAACTATGCAGCGGTGCCGCCGTGGACTCCACTGA...

Protein

Download Protein FASTA

1032 aa · TkA04G247260|TK1151|PROTEIN

MSTTDDKKSTYRIVRICAMEFRLYFCVCLIMMIMAAVAQAQNTTDPAEAQVINSMFRAWGIPESVVTKMRWNISGELCSGAAVDSTDSDSDDFNPAIKCDCAIPNSTTCHITRLKVYAMDVVGTIPEALWTLTYLINLNLGQNYLTGPLSPSIGNLTRMQYMTFGINALSGQIPPDLGRLIDLRSLAFGTNNFNGSLPSELGNLRRLQQLYIDSAGLSGEIPPTFANLVDMRTVWASDNNFTGKIPYFIGNWSHLQSLRL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G247260
TK1151 IDTkA04G247260
OH-1004 IDLXL04_039499
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.300
Protein coverage (%)TK1151 73.353 / OH-1004 81.223
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G247260
LocationChr04:62546894-62563042 (-)
DescriptionSimilar to At1g56140: Probable LRR receptor-like serine/threonine-protein kinase At1g56140
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g56140 Probable LRR receptor-like serine/threonine-protein kinase At1g56140. No verified direct reference in this release
At1g56130 Probable LRR receptor-like serine/threonine-protein kinase At1g56130. No verified direct reference in this release
At1g53430 Probable LRR receptor-like serine/threonine-protein kinase At1g53430. No verified direct reference in this release
At1g53440 Probable LRR receptor-like serine/threonine-protein kinase At1g53440. No verified direct reference in this release
At1g07650 Probable LRR receptor-like serine/threonine-protein kinase At1g07650. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039499 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0045088 regulation of innate immune response Biological Process
GO:0052542 defense response by callose deposition Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G53430
ath:AT1G53440
ath:AT1G56130
ath:AT1G56140
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.809
Rank 1 · TkA04G247260 · TK1151
Endoplasmic reticulum0.090
Rank 2 · TkA04G247260 · TK1151
Cytoplasm0.073
Rank 3 · TkA04G247260 · TK1151
Nucleus0.046
Rank 4 · TkA04G247260 · TK1151
Lysosome / Vacuole0.044
Rank 5 · TkA04G247260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23598LRR_14123-214 aa
PF13855LRR_8131-151 aa
PF00560LRR_1135-156 aa
PF12799LRR_4135-160 aa
PF00560LRR_1166-180 aa
PF12799LRR_4167-197 aa
PF23598LRR_14176-284 aa
PF13855LRR_8180-214 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G247260PF23598LRR_141232144.8e-1659.2
TkA04G247260PF13855LRR_81311511.4e-0731.8
TkA04G247260PF00560LRR_11351565.8e-1655.9
TkA04G247260PF12799LRR_41351604e-0730.8
TkA04G247260PF00560LRR_11661805.8e-1655.9
TkA04G247260PF12799LRR_41671974e-0730.8
TkA04G247260PF23598LRR_141762844.8e-1659.2
TkA04G247260PF13855LRR_81802141.4e-0731.8
TkA04G247260PF00560LRR_11832045.8e-1655.9
TkA04G247260PF12799LRR_41912134e-0730.8
TkA04G247260PF00560LRR_12062285.8e-1655.9
TkA04G247260PF12799LRR_42062454e-0730.8
TkA04G247260PF00560LRR_12322525.8e-1655.9
TkA04G247260PF12799LRR_42322664e-0730.8
TkA04G247260PF13855LRR_82392861.4e-0731.8
TkA04G247260PF00560LRR_12542765.8e-1655.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGH3Arabidopsis thalianasp|C0LGH3|Y5614_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g5614061.200%Swiss-ProtHigh
C0LGH2Arabidopsis thalianasp|C0LGH2|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g5613060.700%Swiss-ProtHigh
C0LGG8Arabidopsis thalianasp|C0LGG8|Y5343_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g5343047.700%Swiss-ProtMedium
C0LGG9Arabidopsis thalianasp|C0LGG9|Y5344_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g5344046.900%Swiss-ProtMedium
C0LGE0Arabidopsis thalianasp|C0LGE0|Y1765_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g0765046.800%Swiss-ProtMedium

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