TkA04G231090 | RubberDandelionOmics

Gene overview

TkA04G231090

Reference: TK1151 Chr: Chr04 Coordinates: 58696882-58700825 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1169 bp · TkA04G231090|TK1151|cDNA

AACATATAGAAAATAAAACCCACAAAACCCACCTCGACGGCGCAAATGAGCGGGACTAGATCAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACACCGGAGGACGAGCAGTATAATGGATTGTTAAGTCGAAGAAGGCGAGCGCGAGACGGCGACGACGGCGGACACTGCAACAGTCGGAGCTTCGCCGGAGAGCAAGACATCGAACGTCGGTGGTCGTTTTCGGATTCTATCGAGTATTTCATGATG...

CDS

Download CDS FASTA

858 bp · TkA04G231090|TK1151|CDS

ATGATCTGCCATAAGAGTGAACACGTACCATTGTCGGTGTTGCTGAAGCGTGAATCGGCGAATCAAAAAGCTGATAGGCCGGAGATTGCTAGCGGTCAAGCTAACGAATCTAAGAAAGGGGAAGATTTCGCATTGATTAAAACCGAATGCCAACGTTTTTTGGGAGACGGCGTTACCACTTATTCCGTTTTCGGGATATTTGATGGTCATAATGGGTCTGCAGCTGCAATTTACACTAAGGAGAATCTTTTGAACAATGT...

Protein

Download Protein FASTA

285 aa · TkA04G231090|TK1151|PROTEIN

MICHKSEHVPLSVLLKRESANQKADRPEIASGQANESKKGEDFALIKTECQRFLGDGVTTYSVFGIFDGHNGSAAAIYTKENLLNNVLCAIPPNIRLHLSAVSTLSQRCLREVSKTLINKKPRMKQKVEMVLSVIANEIPSDAVHRGIQKGDIVKVWGQFCNESIMCRFCTWGYFWKVFLDFLWLHFLIKKRWQQHENMGRFGLSRVQHIFSTWGYFWKNWSQLEDILENLKEKPDVGTLLMALQRIIEFEEELAEKFGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G231090`
TK1151 ID	TkA04G231090
OH-1004 ID	LXL04_008167
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	79.600
Protein coverage (%)	TK1151 31.930 / OH-1004 22.249 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G231090

Location Chr04:58696882-58700825 (-)

Description Similar to At1g47380: Probable protein phosphatase 2C 12

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47380`	Probable protein phosphatase 2C 12.	No verified direct reference in this release
`At1g09160`	Probable protein phosphatase 2C 5.	No verified direct reference in this release
`At1g68410`	Probable protein phosphatase 2C 15.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0567200`	Probable protein phosphatase 2C 15.	No verified direct reference in this release
`Os09g0459600`	Probable protein phosphatase 2C 69.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008167 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G47380

ath:AT1G68410

dosa:Os02g0567200

dosa:Os04g0449400

dosa:Os09g0459600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.432

Rank 1 · TkA04G231090 · TK1151

Nucleus0.380

Rank 2 · TkA04G231090 · TK1151

Mitochondrion0.156

Rank 3 · TkA04G231090 · TK1151

Cell membrane0.109

Rank 4 · TkA04G231090 · TK1151

Endoplasmic reticulum0.082

Rank 5 · TkA04G231090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04100Vps53_N222-267 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G231090	`PF04100`	Vps53_N	222	267	0.0002	21.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FX08`	Arabidopsis thaliana	sp\|Q9FX08\|P2C12_ARATH Probable protein phosphatase 2C 12	77.400%	Swiss-Prot	Low
`O80492`	Arabidopsis thaliana	sp\|O80492\|P2C05_ARATH Probable protein phosphatase 2C 5	58.300%	Swiss-Prot	Low
`Q9M9C6`	Arabidopsis thaliana	sp\|Q9M9C6\|P2C15_ARATH Probable protein phosphatase 2C 15	50.600%	Swiss-Prot	Low
`Q6YTI2`	Oryza sativa subsp. japonica	sp\|Q6YTI2\|P2C15_ORYSJ Probable protein phosphatase 2C 15	52.800%	Swiss-Prot	Low
`Q67J17`	Oryza sativa subsp. japonica	sp\|Q67J17\|P2C69_ORYSJ Probable protein phosphatase 2C 69	53.400%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card