LXL04_008167 | RubberDandelionOmics

Gene overview

LXL04_008167

Reference: OH-1004 Chr: Chr02 Coordinates: 90681934-90689245 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1257 bp · LXL04_008167|LXL04_008167|OH1004|cDNA

ATGTCCGCCGTGAAAGGTGAGCATCACACGATCCCGTTATCTTTGCTGTTGAAGCGTGAATTGGCGAGTGAGAAGACTGAGAGACCGGAGATCACTAGTGGTCAAGCTAACCAGTCAAAGAAAGGGGAGGACTTCACGTTAATCAAAAGTGAATGCCAACGGGTCCTAGGAGATGGTGTGACCACCTACTCTGTTTTTGGGATATTTGACGGCCATAATGGATCTGCAGCTGCTATTTATACAAAGGAGAACCTATTAAA...

CDS

Download CDS FASTA

1257 bp · LXL04_008167|LXL04_008167|OH1004|CDS

ATGTCCGCCGTGAAAGGTGAGCATCACACGATCCCGTTATCTTTGCTGTTGAAGCGTGAATTGGCGAGTGAGAAGACTGAGAGACCGGAGATCACTAGTGGTCAAGCTAACCAGTCAAAGAAAGGGGAGGACTTCACGTTAATCAAAAGTGAATGCCAACGGGTCCTAGGAGATGGTGTGACCACCTACTCTGTTTTTGGGATATTTGACGGCCATAATGGATCTGCAGCTGCTATTTATACAAAGGAGAACCTATTAAA...

Protein

Download Protein FASTA

418 aa · LXL04_008167|LXL04_008167|OH1004|PROTEIN

MSAVKGEHHTIPLSLLLKRELASEKTERPEITSGQANQSKKGEDFTLIKSECQRVLGDGVTTYSVFGIFDGHNGSAAAIYTKENLLNNVLRAIPTELNRDEWISVLPRALVAGFVKTDKDFQEKVQSSGTTVTFVIVEGSVITVASVGDSRCILESADGGLYYLSADHRLECSEEERDRVTASGGEVGRLNAGGGAEIGPLRCWPGGLCLSRSIGDVDVGEFIVPVPYVKQVKLSSAGGRMIIASDGVWDAMSAEAALLC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008167`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008167

Location Chr02:90681934-90689245 (-)

Description Similar to At1g47380: Probable protein phosphatase 2C 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47380`	Probable protein phosphatase 2C 12.	No verified direct reference in this release
`At1g68410`	Probable protein phosphatase 2C 15.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0567200`	Probable protein phosphatase 2C 15.	No verified direct reference in this release
`Os09g0459600`	Probable protein phosphatase 2C 69.	No verified direct reference in this release
`Os04g0449400`	Mediates the negative regulation of osmotic and salt stress tolerance through regulation of the jasmonate and abscisic acid signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_008167 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G47380

ath:AT1G68410

dosa:Os02g0567200

dosa:Os04g0449400

dosa:Os09g0459600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.494

Rank 1 · LXL04_008167 · OH-1004

Nucleus0.309

Rank 2 · LXL04_008167 · OH-1004

Cell membrane0.210

Rank 3 · LXL04_008167 · OH-1004

Endoplasmic reticulum0.107

Rank 4 · LXL04_008167 · OH-1004

Golgi apparatus0.107

Rank 5 · LXL04_008167 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C54-258 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008167	`PF00481.27`	PP2C	54	258	5.7e-31	108.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FX08`	Arabidopsis thaliana	Probable protein phosphatase 2C 12	75.300%	Swiss-Prot	strong database homology
`Q9M9C6`	Arabidopsis thaliana	Probable protein phosphatase 2C 15	56.522%	Swiss-Prot	strong database homology
`Q6YTI2`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 15	62.830%	Swiss-Prot	strong database homology
`Q67J17`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 69	60.922%	Swiss-Prot	strong database homology
`Q7XTC7`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 40	62.121%	Swiss-Prot	strong database homology

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