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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G230820
Reference: TK1151 Chr: Chr04 Coordinates: 58637822-58640257 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2436 bp · TkA04G230820|TK1151|cDNA

ATGATTGGTCGCAGCCGTTCGTTCACCAGGTACGTCTTCAACAATCTTCAATTACTATCGACTTCCCGGGGAAACGACCGCCACAGACTTGGGAAATATCTGAACCGCCGATTAGTTTCGATTCCCGGAAGAATTGATAATGTTTTTGCAACGAGCCCAAGCCCTAATTTTTGTTCCCGGAGTTACTGCACCGGGAAGAACAACGAGTGGACAGAAGAAATCGAGTACCTAGATGAATCCGGCGGTGTTATTTACACCGG...

CDS

Download CDS FASTA

2436 bp · TkA04G230820|TK1151|CDS

ATGATTGGTCGCAGCCGTTCGTTCACCAGGTACGTCTTCAACAATCTTCAATTACTATCGACTTCCCGGGGAAACGACCGCCACAGACTTGGGAAATATCTGAACCGCCGATTAGTTTCGATTCCCGGAAGAATTGATAATGTTTTTGCAACGAGCCCAAGCCCTAATTTTTGTTCCCGGAGTTACTGCACCGGGAAGAACAACGAGTGGACAGAAGAAATCGAGTACCTAGATGAATCCGGCGGTGTTATTTACACCGG...

Protein

Download Protein FASTA

811 aa · TkA04G230820|TK1151|PROTEIN

MIGRSRSFTRYVFNNLQLLSTSRGNDRHRLGKYLNRRLVSIPGRIDNVFATSPSPNFCSRSYCTGKNNEWTEEIEYLDESGGVIYTGKGIRSVEPGVDDHVMVGGIKQPFSNASAVAKIVEIVKRWKWGPEMETQLDKLQFVPNMIHITQALKITGDGDASLSLFKWAKRQSWYSPNDECYLSLIDQLNQSRDFEAIHSVFDDLIRDSTKTKVVPEFNSFGRIIQYLTKAEKLEVSFCCFKKIQESGCKVDTKTYNSLIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G230820
TK1151 IDTkA04G230820
OH-1004 IDLXL04_039341
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G230820
LocationChr04:58637822-58640257 (+)
DescriptionSimilar to EMB2217: Pentatricopeptide repeat-containing protein At1g79490, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g79490 Pentatricopeptide repeat-containing protein At1g79490, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039341 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G18900
ath:AT1G74750
ath:AT1G79490
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.833
Rank 1 · TkA04G230820 · TK1151
Plastid0.095
Rank 2 · TkA04G230820 · TK1151
Nucleus0.074
Rank 3 · TkA04G230820 · TK1151
Cytoplasm0.043
Rank 4 · TkA04G230820 · TK1151
Cell membrane0.014
Rank 5 · TkA04G230820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00637Clathrin66-79 aa
PF29070MSC6_N142-304 aa
PF13041PPR_2157-188 aa
PF13762MNE1161-186 aa
PF17177PPR_long172-266 aa
PF01535PPR180-207 aa
PF13812PPR_3181-204 aa
PF08579RPM2183-229 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G230820PF00637Clathrin66790.2811.7
TkA04G230820PF29070MSC6_N1423049.9e-2175.0
TkA04G230820PF13041PPR_21571882e-51172.6
TkA04G230820PF13762MNE11611860.2312.2
TkA04G230820PF17177PPR_long1722669.5e-2794.5
TkA04G230820PF01535PPR1802074.3e-43143.3
TkA04G230820PF13812PPR_31812048.5e-31106.6
TkA04G230820PF08579RPM21832290.01116.8
TkA04G230820PF24760TPR_IF140_C1932410.1513.2
TkA04G230820PF13762MNE12172640.2312.2
TkA04G230820PF13041PPR_22222602e-51172.6
TkA04G230820PF01535PPR2222484.3e-43143.3
TkA04G230820PF00637Clathrin2222450.2811.7
TkA04G230820PF13812PPR_32402948.5e-31106.6
TkA04G230820PF17177PPR_long2403729.5e-2794.5
TkA04G230820PF23276TPR_242403474.5e-2485.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SAK0Arabidopsis thalianasp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial80.500%Swiss-ProtHigh

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