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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_039341
Reference: OH-1004 Chr: JAJTUU010000010.1 Coordinates: 3571078-3573513 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2436 bp · LXL04_039341|LXL04_039341|OH1004|cDNA

ATGATTGGTCGCAGCCGTTCGTTCACCAGGTACGTCTTCAACAATCTTCAATTACTATCGACTTCCCGGGGAAACGACCGCCACAGACTTGGGAAATATCTGAACCGCCGATTAGTTTCGATTCCCGGAAGAAATGATAATGTTTTTGCAACGAGCCCAAGCCCTAATTTTTGTTCCCGGAGTTACTGCACCGGGAAGAACAACGAGTGGACAGAAGAAATCGAGTACCTAGATGAATCCGGCGGTGTTATTTACACCGG...

CDS

Download CDS FASTA

2436 bp · LXL04_039341|LXL04_039341|OH1004|CDS

ATGATTGGTCGCAGCCGTTCGTTCACCAGGTACGTCTTCAACAATCTTCAATTACTATCGACTTCCCGGGGAAACGACCGCCACAGACTTGGGAAATATCTGAACCGCCGATTAGTTTCGATTCCCGGAAGAAATGATAATGTTTTTGCAACGAGCCCAAGCCCTAATTTTTGTTCCCGGAGTTACTGCACCGGGAAGAACAACGAGTGGACAGAAGAAATCGAGTACCTAGATGAATCCGGCGGTGTTATTTACACCGG...

Protein

Download Protein FASTA

811 aa · LXL04_039341|LXL04_039341|OH1004|PROTEIN

MIGRSRSFTRYVFNNLQLLSTSRGNDRHRLGKYLNRRLVSIPGRNDNVFATSPSPNFCSRSYCTGKNNEWTEEIEYLDESGGVIYTGKGIRSVEPGVDDHVMVGGIKQPFSNASAVAKIVEIVKRWKWGPEMETQLDKLQFVPNMIHITQALKITGDGDASLSLFKWAKRQSWYSPNDECYLSLIDQLNQSRDFEAIHSVFDDLIRDSTKTKVVPEFNSFGRIIQYLTKAEKLEVSFCCFKKIQESGCKVDTKTYNSLIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_039341
TK1151 IDTkA04G230820
OH-1004 IDLXL04_039341
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_039341
LocationJAJTUU010000010.1:3571078-3573513 (-)
DescriptionSimilar to EMB2217: Pentatricopeptide repeat-containing protein At1g79490, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g79490 Pentatricopeptide repeat-containing protein At1g79490, mitochondrial. No verified direct reference in this release
At1g18900 Pentatricopeptide repeat-containing protein At1g18900. No verified direct reference in this release
At1g74750 Pentatricopeptide repeat-containing protein At1g74750. No verified direct reference in this release
At3g06920 Pentatricopeptide repeat-containing protein At3g06920. No verified direct reference in this release
At2g02150 Putative pentatricopeptide repeat-containing protein At2g02150. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039341 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G18900
ath:AT1G74750
ath:AT1G79490
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.837
Rank 1 · LXL04_039341 · OH-1004
Plastid0.092
Rank 2 · LXL04_039341 · OH-1004
Nucleus0.074
Rank 3 · LXL04_039341 · OH-1004
Cytoplasm0.043
Rank 4 · LXL04_039341 · OH-1004
Cell membrane0.015
Rank 5 · LXL04_039341 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N142-302 aa
PF13041.13PPR_2222-261 aa
PF23276.3TPR_24240-347 aa
PF17177.11PPR_long241-372 aa
PF13041.13PPR_2251-298 aa
PF01535.27PPR254-283 aa
PF13812.13PPR_3274-334 aa
PF29070.1MSC6_N276-374 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_039341PF29070.1MSC6_N1423029.9e-2175.0
LXL04_039341PF13041.13PPR_22222615.7e-51171.1
LXL04_039341PF23276.3TPR_242403473e-2486.2
LXL04_039341PF17177.11PPR_long2413725e-2795.4
LXL04_039341PF13041.13PPR_22512985.7e-51171.1
LXL04_039341PF01535.27PPR2542831.2e-42141.9
LXL04_039341PF13812.13PPR_32743342.1e-30105.3
LXL04_039341PF29070.1MSC6_N2763749.9e-2175.0
LXL04_039341PF13041.13PPR_22933205.7e-51171.1
LXL04_039341PF12854.14PPR_13183485.2e-31106.8
LXL04_039341PF13041.13PPR_23243575.7e-51171.1
LXL04_039341PF01535.27PPR3243531.2e-42141.9
LXL04_039341PF13812.13PPR_33443952.1e-30105.3
LXL04_039341PF13041.13PPR_23583915.7e-51171.1
LXL04_039341PF01535.27PPR3593851.2e-42141.9
LXL04_039341PF29070.1MSC6_N3664459.9e-2175.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SAK0Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g79490, mitochondrial73.174%Swiss-Protstrong database homology
Q8GYP6Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1890026.000%Swiss-Protweak database homology
Q9SSF9Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g7475025.349%Swiss-Protweak database homology
Q9M907Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g0692022.833%Swiss-Protweak database homology
P0C894Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At2g0215024.266%Swiss-Protweak database homology

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