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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G228680
Reference: TK1151 Chr: Chr04 Coordinates: 58139313-58146093 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1698 bp · TkA04G228680|TK1151|cDNA

CAATAGAAATGATGATAAGTTTTTTGTCCTAATTTCGTTGGCACTGGTGGAGTGACAAAATATCGAGTCATATCGTACTTTCTAGGGTTTGCTCATTCAATCCTCTAGAAATGGCGAATCAGCTGTACGGTTCCAGCTCCTACGGGTATGGGGGAGGATCCAATTCGTCAAGCATATACACTTCTAAATCCATCGGTGAGCAGTACGTCCCCTCGGACCCATCGCACCTCACTTCGTCTAGGTATTTAGGCTCAGATCCC...

CDS

Download CDS FASTA

1521 bp · TkA04G228680|TK1151|CDS

ATGGCGAATCAGCTGTACGGTTCCAGCTCCTACGGGTATGGGGGAGGATCCAATTCGTCAAGCATATACACTTCTAAATCCATCGGTGAGCAGTACGTCCCCTCGGACCCATCGCACCTCACTTCGTCTAGGTATTTAGGCTCAGATCCCCTGTCAGCGTCTTCCAATTTGTTCAGCTTTTCATCAATCAGCGACAGAGCTCCATCCATGCTGTACAACCAGGATACTATCGGCAGTGGTTACTCCGCTGCGGCCGCTAG...

Protein

Download Protein FASTA

506 aa · TkA04G228680|TK1151|PROTEIN

MANQLYGSSSYGYGGGSNSSSIYTSKSIGEQYVPSDPSHLTSSRYLGSDPLSASSNLFSFSSISDRAPSMLYNQDTIGSGYSAAAARLAGREALWSGPPGVDAGVSATSVESILAGYKRSASEALYHQSLLGYSSNPIVKRPRFESAATNSMLPVYAQRPGEKDCAHYMLTRTCKFGDSCRFDHPMWVPEGGIPDWKEVLTTSEELPERPGAPDCPYFLKTQKCKFGPRCKFNHPKDKVAPLALLENTEGAELPERPSEP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G228680
TK1151 IDTkA04G228680
OH-1004 IDLXL04_039364
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G228680
LocationChr04:58139313-58146093 (+)
DescriptionSimilar to HUA1: Zinc finger CCCH domain-containing protein 37
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12680 Involved in flower development.
HUA1, a regulator of stamen and carpel identities in Arabidopsis, codes for a nuclear RNA binding protein.2001 · DOI: 10.1105/tpc.010201
Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana.2003 · DOI: 10.1016/s1534-5807(02)00399-4
At5g63260 Zinc finger CCCH domain-containing protein 67. No verified direct reference in this release
At2g47850 Zinc finger CCCH domain-containing protein 32. No verified direct reference in this release
At3g02830 Zinc finger CCCH domain-containing protein 33. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0616400 Zinc finger CCCH domain-containing protein 8. No verified direct reference in this release
Os06g0520600 Zinc finger CCCH domain-containing protein 43. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039364 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001709 cell fate determination Biological Process
GO:0006397 mRNA processing Biological Process
GO:0009908 flower development Biological Process
GO:0005634 nucleus Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004518 nuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G12680
ath:AT5G16540
dosa:Os01g0616400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.957
Rank 1 · TkA04G228680 · TK1151
Cytoplasm0.107
Rank 2 · TkA04G228680 · TK1151
Cell membrane0.018
Rank 3 · TkA04G228680 · TK1151
Plastid0.013
Rank 4 · TkA04G228680 · TK1151
Mitochondrion0.010
Rank 5 · TkA04G228680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20992CBP66_2nd145-182 aa
PF00642zf-CCCH161-186 aa
PF25585zf-CCCH_DUS3L162-184 aa
PF15663zf-CCCH_3163-184 aa
PF14608zf-CCCH_2164-185 aa
PF29102Su_sable_N164-185 aa
PF18345zf_CCCH_4165-184 aa
PF18044zf-CCCH_4165-185 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G228680PF20992CBP66_2nd1451820.0001722.2
TkA04G228680PF00642zf-CCCH1611861.6e-55184.7
TkA04G228680PF25585zf-CCCH_DUS3L1621846.7e-2484.2
TkA04G228680PF15663zf-CCCH_31631840.2312.4
TkA04G228680PF14608zf-CCCH_21641851.2e-1764.4
TkA04G228680PF29102Su_sable_N1641850.3212.1
TkA04G228680PF18345zf_CCCH_41651842.7e-2897.9
TkA04G228680PF18044zf-CCCH_41651857.9e-2586.8
TkA04G228680PF16131Torus1651869.5e-0833.3
TkA04G228680PF08352oligo_HPY1721846.38.0
TkA04G228680PF25586zf-CCCH_PAN31741850.9110.0
TkA04G228680PF00642zf-CCCH2112361.6e-55184.7
TkA04G228680PF25585zf-CCCH_DUS3L2132346.7e-2484.2
TkA04G228680PF16131Torus2132349.5e-0833.3
TkA04G228680PF14608zf-CCCH_22142351.2e-1764.4
TkA04G228680PF20992CBP66_2nd2142350.0001722.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q941Q3Arabidopsis thalianasp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 3750.100%Swiss-ProtHigh
Q5RJC5Arabidopsis thalianasp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 6736.400%Swiss-ProtMedium
Q84W91Arabidopsis thalianasp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 3254.800%Swiss-ProtLow
Q8GXX7Arabidopsis thalianasp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 3366.700%Swiss-ProtLow
Q5ZDJ6Oryza sativa subsp. japonicasp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 841.800%Swiss-ProtMedium
Q5Z5Q3Oryza sativa subsp. japonicasp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 4332.300%Swiss-ProtMedium

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