TkA04G198990 | RubberDandelionOmics

Gene overview

TkA04G198990

Reference: TK1151 Chr: Chr04 Coordinates: 51232855-51234550 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

795 bp · TkA04G198990|TK1151|cDNA

ATGGGAGCGGAGGAAGAGAGAGGGACCGCGAGCAGGGGAGACCACCGACGAAACAGGGGCGCCCTTTGTCTTCTTCACAGGCGCTGCAACTCGCTGCCATCCCCGCGAGCAGGACTTGAGTTCGCCGGGTCCTCCTCCAGATCAGCGCCTGCTGCAATCGGCGCTCCAGAGGTCGGCGCCTGCTTCAGATCGACGCCGAATCCAACAGGTTACCTTGATTCTGAAGAGGCAGGGATGGCAGAGGCCGATTCGGTGGTCGG...

CDS

Download CDS FASTA

795 bp · TkA04G198990|TK1151|CDS

ATGGGAGCGGAGGAAGAGAGAGGGACCGCGAGCAGGGGAGACCACCGACGAAACAGGGGCGCCCTTTGTCTTCTTCACAGGCGCTGCAACTCGCTGCCATCCCCGCGAGCAGGACTTGAGTTCGCCGGGTCCTCCTCCAGATCAGCGCCTGCTGCAATCGGCGCTCCAGAGGTCGGCGCCTGCTTCAGATCGACGCCGAATCCAACAGGTTACCTTGATTCTGAAGAGGCAGGGATGGCAGAGGCCGATTCGGTGGTCGG...

Protein

Download Protein FASTA

264 aa · TkA04G198990|TK1151|PROTEIN

MGAEEERGTASRGDHRRNRGALCLLHRRCNSLPSPRAGLEFAGSSSRSAPAAIGAPEVGACFRSTPNPTGYLDSEEAGMAEADSVVGEASVVTVSVVTALTKDLLTKLFYHNHVDFGSRCIANFAEVSALVDVYEGEAVTKLINEKIPYFNASIYLQNKTQIGKVDEIFGPIDESMYEELQVLSPLVSTRQLFHTFASLYRGSFSHHAIFQISLKVMNSRNTTISEAALWENENTAEQEISMEKEGLEHVTGIDGYDYYG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G198990`
TK1151 ID	TkA04G198990
OH-1004 ID	LXL04_023623
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.000
Protein coverage (%)	TK1151 37.879 / OH-1004 18.692 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G198990

Location Chr04:51232855-51234550 (-)

Description Similar to GAL1: Galactokinase

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03920`	Required for ribosome biogenesis.	No verified direct reference in this release
`At5g18180`	Required for ribosome biogenesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023623 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000454 snoRNA guided rRNA pseudouridine synthesis Biological Process

GO:0006012 galactose metabolic process Biological Process

GO:0031120 snRNA pseudouridine synthesis Biological Process

GO:0046835 carbohydrate phosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0031429 box H/ACA snoRNP complex Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G03920

ath:AT3G06580

ath:AT5G18180

kla:KLLA0_F21604g

pic:PICST_75322

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.444

Rank 1 · TkA04G198990 · TK1151

Nucleus0.436

Rank 2 · TkA04G198990 · TK1151

Cell membrane0.101

Rank 3 · TkA04G198990 · TK1151

Mitochondrion0.087

Rank 4 · TkA04G198990 · TK1151

Endoplasmic reticulum0.084

Rank 5 · TkA04G198990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04410Gar1126-177 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G198990	`PF04410`	Gar1	126	177	8.3e-14	51.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VZT0`	Arabidopsis thaliana	sp\|Q8VZT0\|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1	60.900%	Swiss-Prot	Low
`Q9FK53`	Arabidopsis thaliana	sp\|Q9FK53\|NLAL2_ARATH H/ACA ribonucleoprotein complex subunit 1-like protein 2	67.300%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card