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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G194110
Reference: TK1151 Chr: Chr04 Coordinates: 50046372-50048681 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2310 bp · TkA04G194110|TK1151|cDNA

ATGAACACATTGTCGTCTCCCCCAAAACCTCCCTTAAATCCTTCTGAAATCTCTGAAACGCTAACCAAAATCCTCGCGACAAACACTCCTTCCACCTCTTTCACTTCTTCGATCTCCGAATTCATCCCACATTTGACCCCCGGAATCATCCACTCAATTATCTCCTCCAAAACCCTTAAATCAAACCCTCAGTCTCTCCTAAATTTCTTTAAAATATCCCAAAATCACGCTCCCAATTTCGTGATTGGCTCCCCTGCGAC...

CDS

Download CDS FASTA

2310 bp · TkA04G194110|TK1151|CDS

ATGAACACATTGTCGTCTCCCCCAAAACCTCCCTTAAATCCTTCTGAAATCTCTGAAACGCTAACCAAAATCCTCGCGACAAACACTCCTTCCACCTCTTTCACTTCTTCGATCTCCGAATTCATCCCACATTTGACCCCCGGAATCATCCACTCAATTATCTCCTCCAAAACCCTTAAATCAAACCCTCAGTCTCTCCTAAATTTCTTTAAAATATCCCAAAATCACGCTCCCAATTTCGTGATTGGCTCCCCTGCGAC...

Protein

Download Protein FASTA

769 aa · TkA04G194110|TK1151|PROTEIN

MNTLSSPPKPPLNPSEISETLTKILATNTPSTSFTSSISEFIPHLTPGIIHSIISSKTLKSNPQSLLNFFKISQNHAPNFVIGSPATLPSFFVVLQTLFAHNKWSDAKTLLLNFIGADTRHRLLRTILHPTRDIPRHSKALYDTAIGAYVQMGYPQLAMIVFRRMKRLRIRPKLITCNTLLNSLVKHSSSRSILYSREVINDAILLGVVPNVNMFNIMINGYCLENKFGDAKDLMKKMTDFNCVPDNVTYNTLLNALCKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G194110
TK1151 IDTkA04G194110
OH-1004 IDLXL04_030038
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)24.000
Protein coverage (%)TK1151 19.506 / OH-1004 12.753
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G194110
LocationChr04:50046372-50048681 (+)
DescriptionSimilar to At5g55840: Pentatricopeptide repeat-containing protein At5g55840
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g16880 Pentatricopeptide repeat-containing protein At2g16880. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030038 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT5G39710
ath:AT5G55840
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.843
Rank 1 · TkA04G194110 · TK1151
Plastid0.073
Rank 2 · TkA04G194110 · TK1151
Nucleus0.065
Rank 3 · TkA04G194110 · TK1151
Cytoplasm0.035
Rank 4 · TkA04G194110 · TK1151
Cell membrane0.011
Rank 5 · TkA04G194110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19189Mtf224-75 aa
PF28737VPS18_solenoid_2nd43-71 aa
PF12895ANAPC388-112 aa
PF14559TPR_1997-111 aa
PF13041PPR_2142-186 aa
PF01535PPR142-169 aa
PF13812PPR_3142-185 aa
PF23276TPR_24142-189 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G194110PF19189Mtf224753.6e-0730.8
TkA04G194110PF28737VPS18_solenoid_2nd43718e-0936.4
TkA04G194110PF12895ANAPC3881120.02315.7
TkA04G194110PF14559TPR_19971110.004118.1
TkA04G194110PF13041PPR_21421869.3e-166538.6
TkA04G194110PF01535PPR1421692.2e-105338.5
TkA04G194110PF13812PPR_31421852.8e-69229.8
TkA04G194110PF23276TPR_241421891.9e-39135.3
TkA04G194110PF29070MSC6_N1472377.9e-35121.4
TkA04G194110PF19189Mtf21521793.6e-0730.8
TkA04G194110PF17177PPR_long1582882.6e-33115.9
TkA04G194110PF08579RPM21611884e-0524.7
TkA04G194110PF28722WHD_Sfc3_5th1621923.1e-0524.9
TkA04G194110PF24760TPR_IF140_C1642387e-0730.4
TkA04G194110PF12854PPR_11721842.4e-122399.0
TkA04G194110PF01535PPR1751872.2e-105338.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZVX5Arabidopsis thalianasp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g1688040.600%Swiss-ProtLow

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