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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_030038
Reference: OH-1004 Chr: Chr06 Coordinates: 106240481-106244387 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3424 bp · LXL04_030038|LXL04_030038|OH1004|cDNA

ATGGCGGAGCTACCTTCGTCATTTCCAGAAGAAAGACCAAATATGTTCGGCGCTCCAAAATTCTTCAAGTTCTCGAAGAAACTAACTACATTCAGGCACTTCTCGCACATGGGGGTTTGCAGAAATCCAAAAAGGTCACTGAAAAATGGTTATCAAACCAAAAACCAAAACAACTCCGGTTTGGAACTGGAGAACAGCATCTATGCAATTCTCACAATCAGCAGATGGGAGTCTCTAAATCAAATGAACTATAAACTAGT...

CDS

Download CDS FASTA

3414 bp · LXL04_030038|LXL04_030038|OH1004|CDS

ATGGCGGAGCTACCTTCGTCATTTCCAGAAGAAAGACCAAATATGTTCGGCGCTCCAAAATTCTTCAAGTTCTCGAAGAAACTAACTACATTCAGGCACTTCTCGCACATGGGGGTTTGCAGAAATCCAAAAAGGTCACTGAAAAATGGTTATCAAACCAAAAACCAAAACAACTCCGGTTTGGAACTGGAGAACAGCATCTATGCAATTCTCACAATCAGCAGATGGGAGTCTCTAAATCAAATGAACTATAAACTAGT...

Protein

Download Protein FASTA

1137 aa · LXL04_030038|LXL04_030038|OH1004|PROTEIN

MAELPSSFPEERPNMFGAPKFFKFSKKLTTFRHFSHMGVCRNPKRSLKNGYQTKNQNNSGLELENSIYAILTISRWESLNQMNYKLVSLRPVHGTLALKFLNWVIKQPAFQELKNLTYVYCITVHILIKARMYASAKSILTQLSDMGIDPNSIFSVLMDTYPLCKSNPAVFDLLIRVYLQESLIKDALVIFHLMGVRGFTPSIYTCNKILASMRKDNEASWSFFKDMLSKNICPNVATFNILLNVLCFNGKIKKAEHLVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_030038
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_030038
LocationChr06:106240481-106244387 (-)
DescriptionSimilar to At5g55840: Pentatricopeptide repeat-containing protein At5g55840
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g55840 Pentatricopeptide repeat-containing protein At5g55840. No verified direct reference in this release
At5g39710 Pentatricopeptide repeat-containing protein At5g39710. No verified direct reference in this release
At5g59900 Putative pentatricopeptide repeat-containing protein At5g59900. No verified direct reference in this release
At5g01110 Pentatricopeptide repeat-containing protein At5g01110. No verified direct reference in this release
At1g05670 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030038 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT5G39710
ath:AT5G55840
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.819
Rank 1 · LXL04_030038 · OH-1004
Plastid0.084
Rank 2 · LXL04_030038 · OH-1004
Nucleus0.051
Rank 3 · LXL04_030038 · OH-1004
Cytoplasm0.025
Rank 4 · LXL04_030038 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_030038 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276.3TPR_24170-256 aa
PF13812.13PPR_3190-246 aa
PF17177.11PPR_long203-311 aa
PF13041.13PPR_2215-247 aa
PF29070.1MSC6_N218-295 aa
PF12854.14PPR_1230-262 aa
PF13041.13PPR_2234-279 aa
PF01535.27PPR238-266 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_030038PF23276.3TPR_241702564e-62208.7
LXL04_030038PF13812.13PPR_31902467.8e-85279.6
LXL04_030038PF17177.11PPR_long2033112.3e-56191.2
LXL04_030038PF13041.13PPR_22152472.9e-197639.5
LXL04_030038PF29070.1MSC6_N2182959.6e-42144.1
LXL04_030038PF12854.14PPR_12302621.6e-148482.8
LXL04_030038PF13041.13PPR_22342792.9e-197639.5
LXL04_030038PF01535.27PPR2382669.4e-122389.8
LXL04_030038PF13812.13PPR_32583147.8e-85279.6
LXL04_030038PF12854.14PPR_12662981.6e-148482.8
LXL04_030038PF13041.13PPR_22693182.9e-197639.5
LXL04_030038PF01535.27PPR2723029.4e-122389.8
LXL04_030038PF17177.11PPR_long2894372.3e-56191.2
LXL04_030038PF10037.16MRP-S272944022.2e-1453.9
LXL04_030038PF12854.14PPR_13003331.6e-148482.8
LXL04_030038PF13041.13PPR_23053532.9e-197639.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LVQ5Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g5584049.165%Swiss-Protmoderate database homology
Q9FIX3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g3971032.808%Swiss-Protmoderate database homology
Q9FJE6Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At5g5990027.159%Swiss-Protweak database homology
Q9LFC5Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g0111028.363%Swiss-Protweak database homology
Q0WVK7Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g05670, mitochondrial28.666%Swiss-Protweak database homology

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