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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G189440
Reference: TK1151 Chr: Chr04 Coordinates: 48861982-48868471 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5403 bp · TkA04G189440|TK1151|cDNA

ACCATGACCACCGCCACCAGCGTTAACCACCGTAGCAACTCGCCGCCCCTCACGCCGGATGACATAATCCGCTTAGCTCAATACCACACTACTGCACCGCTTCATCCTTACCTCCTCGCCCCAACTTCTCACGATGCCCTCGTCTCCCACCTCCACACACTCCCTCCGTCCGCCGTCTCTGAATACACCTCGTCTCTCCTTTCTCTCCTTTCGCCATCTCCGTCTCTATCCACTCTACTCACCTCTCTACTCCATTCCTA...

CDS

Download CDS FASTA

3975 bp · TkA04G189440|TK1151|CDS

ATGACCACCGCCACCAGCGTTAACCACCGTAGCAACTCGCCGCCCCTCACGCCGGATGACATAATCCGCTTAGCTCAATACCACACTACTGCACCGCTTCATCCTTACCTCCTCGCCCCAACTTCTCACGATGCCCTCGTCTCCCACCTCCACACACTCCCTCCGTCCGCCGTCTCTGAATACACCTCGTCTCTCCTTTCTCTCCTTTCGCCATCTCCGTCTCTATCCACTCTACTCACCTCTCTACTCCATTCCTACAT...

Protein

Download Protein FASTA

1324 aa · TkA04G189440|TK1151|PROTEIN

MTTATSVNHRSNSPPLTPDDIIRLAQYHTTAPLHPYLLAPTSHDALVSHLHTLPPSAVSEYTSSLLSLLSPSPSLSTLLTSLLHSYIILFTSNKIPHDRRSLKTLELFSPHLENIPINELQTISDTIVSSISQIDRDPDEAQLLDLLPKCLHIIFNSNEIDKPQDSVDAVFDRILECNWSRILLVKLVSIIHEFKFVGKGRGKLFAQKVFDNMHCVELQDLPSLVYQLLVLASKGFNKKEVIEGMVMFFGTKMHSKKTSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G189440
TK1151 IDTkA04G189440
OH-1004 IDLXL04_029881
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 97.857
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G189440
LocationChr04:48861982-48868471 (+)
DescriptionSimilar to FANCI: Fanconi anemia group I protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029881 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0031398 positive regulation of protein ubiquitination Biological Process
GO:0036297 interstrand cross-link repair Biological Process
GO:0000785 chromatin Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016020 membrane Cellular Component
GO:0043240 Fanconi anaemia nuclear complex Cellular Component
GO:1990391 DNA repair complex Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0070182 DNA polymerase binding Molecular Function
KEGG gene cross-reference
gga:415491
hsa:55215
mmu:208836
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.918
Rank 1 · TkA04G189440 · TK1151
Cytoplasm0.158
Rank 2 · TkA04G189440 · TK1151
Cell membrane0.031
Rank 3 · TkA04G189440 · TK1151
Endoplasmic reticulum0.021
Rank 4 · TkA04G189440 · TK1151
Mitochondrion0.017
Rank 5 · TkA04G189440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14675FANCI_S1107-279 aa
PF14680FANCI_HD2269-294 aa
PF14679FANCI_HD1283-364 aa
PF14676FANCI_S2377-530 aa
PF14680FANCI_HD2549-770 aa
PF14675FANCI_S1726-761 aa
PF14678FANCI_S4790-874 aa
PF14676FANCI_S2898-926 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G189440PF14675FANCI_S11072798.7e-1762.1
TkA04G189440PF14680FANCI_HD22692945.3e-48164.0
TkA04G189440PF14679FANCI_HD12833642.7e-2072.8
TkA04G189440PF14676FANCI_S23775301.2e-47162.7
TkA04G189440PF14680FANCI_HD25497705.3e-48164.0
TkA04G189440PF14675FANCI_S17267618.7e-1762.1
TkA04G189440PF14678FANCI_S47908742.5e-61207.7
TkA04G189440PF14676FANCI_S28989261.2e-47162.7
TkA04G189440PF14678FANCI_S4102212562.5e-61207.7
TkA04G189440PF14680FANCI_HD2110911465.3e-48164.0
TkA04G189440PF14679FANCI_HD1111211442.7e-2072.8
TkA04G189440PF14675FANCI_S1111911498.7e-1762.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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