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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G172430
Reference: TK1151 Chr: Chr04 Coordinates: 44640451-44643166 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1418 bp · TkA04G172430|TK1151|cDNA

GACAATGTTGTATTTTGTGTCCTTTCACTGCATACTAATATCTTTCTCTCTAGTAAAGATCTTGCTTAAAAGTTCTTTAATTCCTTTCTAATTTCAGACATACATCATGGTTGGGCGTATTTTAATGCTTCTTCATAAGGACATATTTTGCAGACATGGATTTGGCTTTACATGTACATAAGAAATTAAATCGGAGGAGACAAGCACAAAGAACGTAGGTGGACTCGTGGAGTTGGATTGAGAGAAATATTACAAAGTTG...

CDS

Download CDS FASTA

825 bp · TkA04G172430|TK1151|CDS

ATGACTACAGCGGCAGCTGCAGGGGCGGCGACCGGTTCTGGTTCTGAAACTCGAAATTCCCGATGGTCTCTAGCCGGAATGACTGCTCTCGTTACCGGTGGTACACGTGGGATCGGCCACGCAGTGGTGGAGGAATTGGCGGAGTTAGGGGCGGCGGTACACACCTGCTCTCGCAACGAGGCCGAGCTCAACCAACGTCTCCAAGAATGGTCGACCAAGGGCTTCACCGTCACCGGATCCGTCTGCGATGCAACTTCTAC...

Protein

Download Protein FASTA

274 aa · TkA04G172430|TK1151|PROTEIN

MTTAAAAGAATGSGSETRNSRWSLAGMTALVTGGTRGIGHAVVEELAELGAAVHTCSRNEAELNQRLQEWSTKGFTVTGSVCDATSTPDRKRLLEKVSSIFNGKLNILINNVGTTIVKPALEYTSEEYSLIMATNLESGYHMSQLAHPFLKASGFGSIVFISSVAGSIQINCTSIYGPTKAAMNQLATNLACEWAKDNIRSNSVAPGCTRTPLVEPLLSNQEFLDTMVSRIPMKRIAEVNEVSSMVAFLCMPAASYITGQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G172430
TK1151 IDTkA04G172430
OH-1004 IDLXL04_035058
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G172430
LocationChr04:44640451-44643166 (+)
DescriptionSimilar to SDR: Tropinone reductase homolog At2g29360
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g29360 Oxidoreductase active on cyclic ketones, but not on tropinone or nortropinone. No verified direct reference in this release
At5g06060 Tropinone reductase homolog At5g06060. No verified direct reference in this release
At2g29350 Unspecific reductase providing both diastereomeric alcohols from the prochiral ketones. No verified direct reference in this release
At2g29290 Tropinone reductase homolog At2g29290. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035058 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002213 defense response to insect Biological Process
GO:0031347 regulation of defense response Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function
GO:0016491 oxidoreductase activity Molecular Function
GO:0050356 tropine dehydrogenase activity Molecular Function
GO:0050358 tropinone reductase activity Molecular Function
KEGG gene cross-reference
ath:AT2G29290
ath:AT2G29350
ath:AT2G29360
ath:AT5G06060
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.401
Rank 1 · TkA04G172430 · TK1151
Cytoplasm0.302
Rank 2 · TkA04G172430 · TK1151
Peroxisome0.271
Rank 3 · TkA04G172430 · TK1151
Nucleus0.100
Rank 4 · TkA04G172430 · TK1151
Plastid0.066
Rank 5 · TkA04G172430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26062PccX3-33 aa
PF23441SDR24-268 aa
PF04321RmlD_sub_bind27-65 aa
PF00106adh_short28-220 aa
PF08659KR28-189 aa
PF01370Epimerase29-95 aa
PF05368NmrA29-101 aa
PF02719Polysacc_synt_230-196 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G172430PF26062PccX3330.5611.3
TkA04G172430PF23441SDR242680.0002621.2
TkA04G172430PF04321RmlD_sub_bind27650.2511.1
TkA04G172430PF00106adh_short282201.5e-48165.6
TkA04G172430PF08659KR281892.2e-1144.7
TkA04G172430PF01370Epimerase29950.0004120.6
TkA04G172430PF05368NmrA291010.3111.3
TkA04G172430PF02719Polysacc_synt_2301960.0812.8
TkA04G172430PF16363GDP_Man_Dehyd30830.1112.6
TkA04G172430PF13460NAD_binding_1033660.2312.0
TkA04G172430PF13561adh_short_C2362696.5e-58196.8
TkA04G172430PF00107ADH_zinc_N371250.1312.9
TkA04G172430PF29650ATG23411150.1811.8
TkA04G172430PF26062PccX46890.5611.3
TkA04G172430PF16363GDP_Man_Dehyd1721900.1112.6
TkA04G172430PF04321RmlD_sub_bind1731880.2511.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZW19Arabidopsis thalianasp|Q9ZW19|TRNHC_ARATH Tropinone reductase homolog At2g2936067.600%Swiss-ProtHigh
Q9LHT0Arabidopsis thalianasp|Q9LHT0|TRNHF_ARATH Tropinone reductase homolog At5g0606066.400%Swiss-ProtHigh
Q9ZW18Arabidopsis thalianasp|Q9ZW18|SAG13_ARATH Senescence-associated protein 1365.900%Swiss-ProtHigh
Q9ZW13Arabidopsis thalianasp|Q9ZW13|TRNH6_ARATH Tropinone reductase homolog At2g2929063.600%Swiss-ProtHigh

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