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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G171590
Reference: TK1151 Chr: Chr04 Coordinates: 44385858-44387282 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

840 bp · TkA04G171590|TK1151|cDNA

TTTGGAGCTCTCTCCAAACATCTACAATCTCTGCCATCATCAACCTTTTTTGCATGGTTTGTGGGAAGTGTAGAGACAAATAATGGCATATAGGGTTGATCACGAGTATGATTACCTATTTAAGATCGTGTTAATTGGGGATTCGGGTGTCGGAAAATCCAATATACTTTCTCGGTTTACCCGGAATGAGTTCTGTTTGGAGTCAAAATCCACCATTGGCGTCGAATTTGCTACAAGGACTCTTCAGGTGGAAGGAAAGA...

CDS

Download CDS FASTA

648 bp · TkA04G171590|TK1151|CDS

ATGGCATATAGGGTTGATCACGAGTATGATTACCTATTTAAGATCGTGTTAATTGGGGATTCGGGTGTCGGAAAATCCAATATACTTTCTCGGTTTACCCGGAATGAGTTCTGTTTGGAGTCAAAATCCACCATTGGCGTCGAATTTGCTACAAGGACTCTTCAGGTGGAAGGAAAGACGGTGAAAGCACAAATATGGGATACAGCGGGTCAAGAAAGGTATAGAGCAATCACAAGTGCTTATTATAGAGGGGCAGTAGG...

Protein

Download Protein FASTA

215 aa · TkA04G171590|TK1151|PROTEIN

MAYRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFENVQRWLRELRDHADSNIVIMLAGNKSDLNHLRAVLETDGQGFAEKEGLSFLETSALEAHNVEKAFQMILLDIYQIISRKALAAQEAAAAVPTQGTTINVGDYDNNGKQKGCCSH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G171590
TK1151 IDTkA04G171590
OH-1004 IDLXL04_035068
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G171590
LocationChr04:44385858-44387282 (+)
DescriptionSimilar to RAB11C: Ras-related protein Rab11C
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07410 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At3g46830 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At5g59150 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035068 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015031 protein transport Biological Process
GO:0042546 cell wall biogenesis Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009504 cell plate Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009536 plastid Cellular Component
GO:0010008 endosome membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
KEGG gene cross-reference
ath:AT1G07410
ath:AT3G46830
ath:AT5G59150
bvg:104900042
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.505
Rank 1 · TkA04G171590 · TK1151
Golgi apparatus0.436
Rank 2 · TkA04G171590 · TK1151
Cell membrane0.194
Rank 3 · TkA04G171590 · TK1151
Lysosome / Vacuole0.190
Rank 4 · TkA04G171590 · TK1151
Endoplasmic reticulum0.140
Rank 5 · TkA04G171590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf13-133 aa
PF00071Ras14-174 aa
PF08477Roc14-128 aa
PF01926MMR_HSR114-121 aa
PF04670Gtr1_RagA14-114 aa
PF09439SRPRB14-132 aa
PF10662PduV-EutP14-66 aa
PF02421FeoB_N14-70 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G171590PF00025Arf131331.3e-1351.5
TkA04G171590PF00071Ras141741.6e-62210.6
TkA04G171590PF08477Roc141282.6e-35121.9
TkA04G171590PF01926MMR_HSR1141212.2e-0628.5
TkA04G171590PF04670Gtr1_RagA141140.03714.1
TkA04G171590PF09439SRPRB141320.03914.0
TkA04G171590PF10662PduV-EutP14660.07813.5
TkA04G171590PF02421FeoB_N14700.1512.2
TkA04G171590PF03193RsgA_GTPase15340.003817.8
TkA04G171590PF13401AAA_2215730.0215.9
TkA04G171590PF05621TniB15360.03514.3
TkA04G171590PF13191AAA_1615340.07114.3
TkA04G171590PF13173AAA_14151270.1113.2
TkA04G171590PF00005ABC_tran15450.1213.7
TkA04G171590PF13238AAA_18151180.1813.0
TkA04G171590PF00009GTP_EFTU491700.0001222.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LNW1Arabidopsis thalianasp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b84.600%Swiss-ProtHigh
Q96283Arabidopsis thalianasp|Q96283|RAA2C_ARATH Ras-related protein RABA2c84.300%Swiss-ProtHigh
Q9FIF9Arabidopsis thalianasp|Q9FIF9|RAA2D_ARATH Ras-related protein RABA2d83.900%Swiss-ProtHigh

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