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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G169900
Reference: TK1151 Chr: Chr04 Coordinates: 43869603-43872602 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2915 bp · TkA04G169900|TK1151|cDNA

TTTACTGCCAACTAAACAGCATATGGAATTGGATTCCTTTTCCTGATAGATTCATTTTCCAATTTCAATTTATTTTCCTTCCGCAACAATTGCCAACCAAACAGGCCTTATTCATCACATCAAACTAGAATAATTAGAGAATTGCAACACGTGAGAATTAAAGGAACGAGTAAAACGTAAATAAACCGCGTCACGCGTGCGACCCCCCACTCGCCTGGAATCTGTAATCAGTCATCCAATTTAGTTATTGTATAATATCA...

CDS

Download CDS FASTA

1944 bp · TkA04G169900|TK1151|CDS

ATGTGTAAGGTTACACAGGGTAAACTTCACTCTGTCATGGATGGAGAGAAGTTTCAAGAGAAATACCACGGATTGTTCCTGAAATGCTCGAATTTGCTGGAATTAGCAGCTTCGGATGATGTTTCTGGGTTTATTTACATGGTAGAAGAGAAGGGTGAGAGCTTAGATGAGATCAGCTTTTGGTACGGACGAAGAAATGGGTGCAAAGGCAAGATGGGGCTAGAAGAACGAACCCCTCTCATGATTGCTTCCATGTATGG...

Protein

Download Protein FASTA

647 aa · TkA04G169900|TK1151|PROTEIN

MCKVTQGKLHSVMDGEKFQEKYHGLFLKCSNLLELAASDDVSGFIYMVEEKGESLDEISFWYGRRNGCKGKMGLEERTPLMIASMYGSIHVVKYIIDAKKVDVNRVSDSDGATALHCAAAGGSPLSVEVVKLLLEASADVNLTDGDGNKAGDLMARGIKSSKPRVLEMLLNGFGIKDGCDEEQIEENEVVSSKKEYPVDVSMPDINNGVYGSDEFRMYTFKVKPCSRAYTHDWTECPFVHPGENARRRDLRKFNYSCVPC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G169900
TK1151 IDTkA04G169900
OH-1004 IDLXL04_035093
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.800
Protein coverage (%)TK1151 100.000 / OH-1004 87.788
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G169900
LocationChr04:43869603-43872602 (+)
DescriptionSimilar to At2g40140: Zinc finger CCCH domain-containing protein 29
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g40140 Involved in salt stress response. No verified direct reference in this release
At3g55980 Involved in salt stress response. No verified direct reference in this release
At5g58620 Zinc finger CCCH domain-containing protein 66. No verified direct reference in this release
At2g41900 Zinc finger CCCH domain-containing protein 30. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0698800 Zinc finger CCCH domain-containing protein 24. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035093 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006412 translation Biological Process
GO:0009409 response to cold Biological Process
GO:0009651 response to salt stress Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0080090 regulation of primary metabolic process Biological Process
GO:1902074 response to salt Biological Process
GO:0000932 P-body Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT2G40140
ath:AT2G41900
ath:AT3G55980
ath:AT5G58620
dosa:Os05g0128200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.587
Rank 1 · TkA04G169900 · TK1151
Nucleus0.363
Rank 2 · TkA04G169900 · TK1151
Cell membrane0.087
Rank 3 · TkA04G169900 · TK1151
Mitochondrion0.053
Rank 4 · TkA04G169900 · TK1151
Golgi apparatus0.052
Rank 5 · TkA04G169900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12796Ank_268-144 aa
PF13857Ank_576-116 aa
PF00023Ank77-106 aa
PF13606Ank_377-104 aa
PF13637Ank_481-134 aa
PF13857Ank_5107-150 aa
PF00023Ank110-144 aa
PF13606Ank_3110-141 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G169900PF12796Ank_2681446.9e-1452.9
TkA04G169900PF13857Ank_5761164.4e-0627.7
TkA04G169900PF00023Ank771061e-1454.5
TkA04G169900PF13606Ank_3771046.6e-1142.0
TkA04G169900PF13637Ank_4811344.4e-1246.6
TkA04G169900PF13857Ank_51071504.4e-0627.7
TkA04G169900PF00023Ank1101441e-1454.5
TkA04G169900PF13606Ank_31101416.6e-1142.0
TkA04G169900PF13637Ank_41271504.4e-1246.6
TkA04G169900PF13606Ank_31601756.6e-1142.0
TkA04G169900PF25512zf-CCCH_AtC3H232142478.6e-2174.1
TkA04G169900PF23261zf-CCCH_112322431.29.4
TkA04G169900PF25542zf-CCCH_122332401.79.1
TkA04G169900PF18345zf_CCCH_42352400.001819.0
TkA04G169900PF00642zf-CCCH2352410.7610.5
TkA04G169900PF14608zf-CCCH_22352413.19.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9XEE6Arabidopsis thalianasp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 2950.100%Swiss-ProtHigh
Q93ZS9Arabidopsis thalianasp|Q93ZS9|C3H47_ARATH Zinc finger CCCH domain-containing protein 4750.100%Swiss-ProtHigh
Q9LUZ4Arabidopsis thalianasp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 6648.000%Swiss-ProtMedium
P93755Arabidopsis thalianasp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 3037.700%Swiss-ProtMedium
Q10EL1Oryza sativa subsp. japonicasp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 2442.600%Swiss-ProtMedium

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