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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G125720
Reference: TK1151 Chr: Chr04 Coordinates: 32665608-32671359 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1299 bp · TkA04G125720|TK1151|cDNA

ATGTGATGCCCTATGTTGATCCACAATATCCTTTTCTCAACTCATAGCAACAGTTCGGTGTTTCCCCTGTTCCTGAGCAAACCCCAAAGTTAGAGCAGAGAAGCAGACGACTACCATGGATGATTCCAAAATTAAAGAACTCAAGCTCTTCGTCGAGAGTTGCCAAGCCGACCCCTCAATTCTACATAGCCCATCTCTAGGTTTCTTCAAATCCTTTCTCCAAAGCCTCGGCGCCAAAATCCCACCAGCATCAACATCGA...

CDS

Download CDS FASTA

1167 bp · TkA04G125720|TK1151|CDS

ATGGATGATTCCAAAATTAAAGAACTCAAGCTCTTCGTCGAGAGTTGCCAAGCCGACCCCTCAATTCTACATAGCCCATCTCTAGGTTTCTTCAAATCCTTTCTCCAAAGCCTCGGCGCCAAAATCCCACCAGCATCAACATCGAATGCAGGAAATGGACACACATCCAATGATGAGATTATGGAGTCAGACCTCGAGTTAGATGATTCAGATGTTGTAAAGCCTGACATAGACCCTCCCCAAAAGATGGGAGATCTCTC...

Protein

Download Protein FASTA

388 aa · TkA04G125720|TK1151|PROTEIN

MDDSKIKELKLFVESCQADPSILHSPSLGFFKSFLQSLGAKIPPASTSNAGNGHTSNDEIMESDLELDDSDVVKPDIDPPQKMGDLSIEVTDENRDLAQTLKSKAIDAISQGKLNEAIDHLTEAIMMNPTSAILYATRANVFVKLQKPNAAIRDADVALQINADSAKGYKMRGIARAMLGLWEEAARDLGIASNLDYDDEIGSLLKKIEPNVHKIKEHRRKYERLRKEKKAKEDERERQKSRPKTEEMDASSQTNGEVVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G125720
TK1151 IDTkA04G125720
OH-1004 IDLXL04_035515
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.100
Protein coverage (%)TK1151 93.041 / OH-1004 99.180
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G125720
LocationChr04:32665608-32671359 (-)
DescriptionSimilar to TDX: TPR repeat-containing thioredoxin TDX
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: Q8VWG7 Thiol-disulfide oxidoreductase that possesses insulin disulfide bonds reducing activity, disulfide reductase, foldase chaperone and holdase chaperone activities. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0401200 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions and act as chaperone under heat shock. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035515 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0006950 response to stress Biological Process
GO:0010286 heat acclimation Biological Process
GO:0051259 protein complex oligomerization Biological Process
GO:0000118 histone deacetylase complex Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0070062 extracellular exosome Cellular Component
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors Molecular Function
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor Molecular Function
GO:0030544 Hsp70 protein binding Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT3G17880
ath:AT4G22670
dosa:Os09g0401200
gga:418003
osa:4346999
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.590
Rank 1 · TkA04G125720 · TK1151
Nucleus0.463
Rank 2 · TkA04G125720 · TK1151
Mitochondrion0.075
Rank 3 · TkA04G125720 · TK1151
Cell membrane0.056
Rank 4 · TkA04G125720 · TK1151
Endoplasmic reticulum0.039
Rank 5 · TkA04G125720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18253HipN2-43 aa
PF25575TPR_BSK1_C85-164 aa
PF25524RSLD_CPSF689-144 aa
PF13424TPR_1292-125 aa
PF13431TPR_1797-118 aa
PF00515TPR_198-130 aa
PF13728TraF98-141 aa
PF07719TPR_2103-130 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G125720PF18253HipN2436.8e-1968.0
TkA04G125720PF25575TPR_BSK1_C851640.007616.8
TkA04G125720PF25524RSLD_CPSF6891440.03615.0
TkA04G125720PF13424TPR_12921250.03515.0
TkA04G125720PF13431TPR_17971180.01316.4
TkA04G125720PF00515TPR_1981306.6e-0832.8
TkA04G125720PF13728TraF981410.02615.1
TkA04G125720PF07719TPR_21031304e-0833.5
TkA04G125720PF13432TPR_161041330.008617.2
TkA04G125720PF14559TPR_191081650.0005620.9
TkA04G125720PF29407CFAP70_TPR_C1081990.08413.1
TkA04G125720PF02064MAS201081323.38.1
TkA04G125720PF13371TPR_91091541.6e-0525.6
TkA04G125720PF13428TPR_141091390.1413.7
TkA04G125720PF13181TPR_81091300.212.7
TkA04G125720PF13414TPR_111101456.6e-0626.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VWG7Arabidopsis thalianasp|Q8VWG7|TDX_ARATH TPR repeat-containing thioredoxin TDX57.800%Swiss-ProtHigh
Q6ES52Oryza sativa subsp. japonicasp|Q6ES52|TDX_ORYSJ TPR repeat-containing thioredoxin TDX54.700%Swiss-ProtHigh

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