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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G123180
Reference: TK1151 Chr: Chr04 Coordinates: 32029463-32034429 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2388 bp · TkA04G123180|TK1151|cDNA

TTTCGATTATTGAACCAACTACTGTCGTCTTTTTGAGCGCCGAAGAATCAAAACCCCTCTGGTCCACGACTGAAGAACGAGAATCAGAGGTGAATGATCGATGGCTCTTTTACGACTTCGACATCATCCGGTGATCTCACGAGCACCTTCGCTACTTAGGGCTCGCCTCCTTTCTTCCACCTCCAGATCCATTTCCCGCTATTCCAGATTGCAGAATTCCATACTCGATGATGGTGGCACTTTGTTAAGGCCCAAACTTT...

CDS

Download CDS FASTA

1914 bp · TkA04G123180|TK1151|CDS

ATGGCTCTTTTACGACTTCGACATCATCCGGTGATCTCACGAGCACCTTCGCTACTTAGGGCTCGCCTCCTTTCTTCCACCTCCAGATCCATTTCCCGCTATTCCAGATTGCAGAATTCCATACTCGATGATGGTGGCACTTTGTTAAGGCCCAAACTTTTTTTTGCATTCAATGGCGTCCATGACCATTCTACACTAAAGTCTCTGAGTGGTATCAGATGCTACTCATCTGCAGAACCCCCTGCACATATAGTGATTGG...

Protein

Download Protein FASTA

637 aa · TkA04G123180|TK1151|PROTEIN

MALLRLRHHPVISRAPSLLRARLLSSTSRSISRYSRLQNSILDDGGTLLRPKLFFAFNGVHDHSTLKSLSGIRCYSSAEPPAHIVIGMPALSPTMTQGNIAKWWKKEGDKIEVGDIICEIETDKATLEFESLEEGFLAKILVPAGAKDVPVGQPIAITVEEAENLHNIPDSVLGGSEVKETESTQANVKTEDTVTESTSGKVDASNLPPHILIEMPALSPTMDQGNIARWLKKEGDKIEVGDIICEIETDKATLEFECLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G123180
TK1151 IDTkA04G123180
OH-1004 IDLXL04_035567
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G123180
LocationChr04:32029463-32034429 (+)
DescriptionSimilar to LTA3: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g52200 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). No verified direct reference in this release
At3g13930 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). No verified direct reference in this release
At1g54220 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035567 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006006 glucose metabolic process Biological Process
GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process
GO:0006099 tricarboxylic acid cycle Biological Process
GO:0042867 pyruvate catabolic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0005829 cytosol Cellular Component
GO:0045254 pyruvate dehydrogenase complex Cellular Component
GO:0120212 sperm head-tail coupling apparatus Cellular Component
GO:0000166 nucleotide binding Molecular Function
GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT3G52200
bta:512723
hsa:1737
mmu:235339
rno:81654
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.810
Rank 1 · TkA04G123180 · TK1151
Plastid0.098
Rank 2 · TkA04G123180 · TK1151
Cytoplasm0.088
Rank 3 · TkA04G123180 · TK1151
Peroxisome0.050
Rank 4 · TkA04G123180 · TK1151
Nucleus0.038
Rank 5 · TkA04G123180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00364Biotin_lipoyl86-156 aa
PF02749QRPTase_N86-123 aa
PF25984BSH_YknX94-132 aa
PF26018BSH_RND_rel96-138 aa
PF25997BSH_YhbJ96-159 aa
PF25917BSH_RND97-139 aa
PF07831PYNP_C105-121 aa
PF16537T2SSB106-130 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G123180PF00364Biotin_lipoyl861562e-36124.4
TkA04G123180PF02749QRPTase_N861230.001419.5
TkA04G123180PF25984BSH_YknX941320.0001422.3
TkA04G123180PF26018BSH_RND_rel961382e-1041.1
TkA04G123180PF25997BSH_YhbJ961593.4e-0937.3
TkA04G123180PF25917BSH_RND971390.004917.4
TkA04G123180PF07831PYNP_C1051210.06713.6
TkA04G123180PF16537T2SSB1061300.1812.2
TkA04G123180PF03293Pox_RNA_pol1101360.06613.5
TkA04G123180PF00364Biotin_lipoyl1751962e-36124.4
TkA04G123180PF00364Biotin_lipoyl2132832e-36124.4
TkA04G123180PF25984BSH_YknX2213570.0001422.3
TkA04G123180PF25997BSH_YhbJ2232863.4e-0937.3
TkA04G123180PF26018BSH_RND_rel2242802e-1041.1
TkA04G123180PF25917BSH_RND2252800.004917.4
TkA04G123180PF02749QRPTase_N2272490.001419.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WQF7Arabidopsis thalianasp|Q0WQF7|ODP21_ARATH Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial61.300%Swiss-ProtHigh
Q8RWN9Arabidopsis thalianasp|Q8RWN9|ODP22_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial44.000%Swiss-ProtMedium
Q5M729Arabidopsis thalianasp|Q5M729|ODP23_ARATH Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial42.600%Swiss-ProtMedium

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