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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G121280
Reference: TK1151 Chr: Chr04 Coordinates: 31496687-31499439 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1341 bp · TkA04G121280|TK1151|cDNA

CTTGACGAATAATTTAGTACAGAAAGGTCCTGTTTGACGTGGCATGGGTCCCACAAACGTCTTTAATATTCGAACTCCGATTTATGTCACTTCTTCACGTCACTCCGTTTCCATTACAAACAACTCCCATTGCCGGAAAACTCGAAACACTTTGGACAATCTATGGCTACTGCCGGCGCCGGTCCCGCCTTTGACTTCTCTGCCGTCAGAGTCCGTGGCAATTCTTCTTTCAGACTTACCGGTTTTGAATTTTCATCATC...

CDS

Download CDS FASTA

870 bp · TkA04G121280|TK1151|CDS

ATGGCTACTGCCGGCGCCGGTCCCGCCTTTGACTTCTCTGCCGTCAGAGTCCGTGGCAATTCTTCTTTCAGACTTACCGGTTTTGAATTTTCATCATCGACGATTCCTCAACTTTCTCCGTTCAAGTCGTCTTCACCTCACCTCGCTTTCTCTCCGCGTGGATCATCTCATTTTGCTAGAAAGAATATTTTTCAAGCTTCCATCGATGGCGTGGACTCACTTGGTGATGCGGACAACATCCCTACTCCAATTGTTTTAAT...

Protein

Download Protein FASTA

289 aa · TkA04G121280|TK1151|PROTEIN

MATAGAGPAFDFSAVRVRGNSSFRLTGFEFSSSTIPQLSPFKSSSPHLAFSPRGSSHFARKNIFQASIDGVDSLGDADNIPTPIVLIDQGSDPSATIVHVSFGDRLGALIDTMKSLKDLGLDVAKGTVTTEGSVIETIFFITRLSTGRKVEDPDLLERIRLTIINNLLKYHPESSSRLAMGEAFGIEAPIKKLDVDIETHIHVKDAGPKRSLLCVETEDRPGLLLEIVKIMSDVNVTMESAEIDTEGLIAKDKFHVSYRG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G121280
TK1151 IDTkA04G121280
OH-1004 IDLXL04_035608
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G121280
LocationChr04:31496687-31499439 (+)
DescriptionSimilar to ACR12: ACT domain-containing protein ACR12
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g04740 May be involved in feedback regulation of amino acid metabolism.
The ACR11 encodes a novel type of chloroplastic ACT domain repeat protein that is coordinately expressed with GLN2 in Arabidopsis.2011 · DOI: 10.1186/1471-2229-11-118
At1g16880 May be involved in feedback regulation of amino acid metabolism.
The ACR11 encodes a novel type of chloroplastic ACT domain repeat protein that is coordinately expressed with GLN2 in Arabidopsis.2011 · DOI: 10.1186/1471-2229-11-118

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: P83643 ACT domain-containing protein DS12, chloroplastic. No verified direct reference in this release
Os08g0242700 ACT domain-containing protein DS12, chloroplastic. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035608 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009409 response to cold Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009744 response to sucrose Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0010319 stromule Cellular Component
GO:0016597 amino acid binding Molecular Function
KEGG gene cross-reference
ath:AT1G16880
ath:AT5G04740
ath:AT5G65890
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.944
Rank 1 · TkA04G121280 · TK1151
Nucleus0.051
Rank 2 · TkA04G121280 · TK1151
Mitochondrion0.044
Rank 3 · TkA04G121280 · TK1151
Cytoplasm0.035
Rank 4 · TkA04G121280 · TK1151
Peroxisome0.022
Rank 5 · TkA04G121280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01842ACT84-117 aa
PF24931ACT_ACR9_3rd85-162 aa
PF26956ACT_ACR_D191-164 aa
PF24914ACR10_N94-146 aa
PF22754bHLH-TF_ACT-like_plant97-140 aa
PF13291ACT_498-131 aa
PF01842ACT116-142 aa
PF22754bHLH-TF_ACT-like_plant202-243 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G121280PF01842ACT841172.4e-0524.7
TkA04G121280PF24931ACT_ACR9_3rd851624.3e-1040.2
TkA04G121280PF26956ACT_ACR_D1911642.3e-1453.7
TkA04G121280PF24914ACR10_N941460.02414.7
TkA04G121280PF22754bHLH-TF_ACT-like_plant971400.0007320.3
TkA04G121280PF13291ACT_4981310.001619.7
TkA04G121280PF01842ACT1161422.4e-0524.7
TkA04G121280PF22754bHLH-TF_ACT-like_plant2022430.0007320.3
TkA04G121280PF24931ACT_ACR9_3rd2072444.3e-1040.2
TkA04G121280PF26956ACT_ACR_D12112582.3e-1453.7
TkA04G121280PF24914ACR10_N2112480.02414.7
TkA04G121280PF01842ACT2152482.4e-0524.7
TkA04G121280PF13291ACT_42152510.001619.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LZ23Arabidopsis thalianasp|Q9LZ23|ACR12_ARATH ACT domain-containing protein ACR1268.900%Swiss-ProtHigh
Q9FZ47Arabidopsis thalianasp|Q9FZ47|ACR11_ARATH ACT domain-containing protein ACR1161.300%Swiss-ProtHigh
P83643Oryza sativa subsp. indicasp|P83643|UP12_ORYSI ACT domain-containing protein DS12, chloroplastic58.100%Swiss-ProtHigh
Q0J709Oryza sativa subsp. japonicasp|Q0J709|UP12_ORYSJ ACT domain-containing protein DS12, chloroplastic58.100%Swiss-ProtHigh

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