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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G102120
Reference: TK1151 Chr: Chr04 Coordinates: 26535313-26537007 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1695 bp · TkA04G102120|TK1151|cDNA

ATGAAATCGGACCCCCGCCGGATACACGCTCAAGTAATAAAAACCAACACCGCCGGCACCTCCGAGTACCGTTTCCAGCTCAACAATCTCATACCACTCTACTTCAAATCCCACTTCCTCCCCTACGCCGTTCGTCTCTTCCAACAAATCCCCTCCCCCAATGTCGTCTCATGGACAACCCTCATCTCCGGCCACTCCGACACTCCCGCCGCCCTCGACCACTTCGTCTCCATGCTCCGTCACCCCACCCTCCCCAACCA...

CDS

Download CDS FASTA

1695 bp · TkA04G102120|TK1151|CDS

ATGAAATCGGACCCCCGCCGGATACACGCTCAAGTAATAAAAACCAACACCGCCGGCACCTCCGAGTACCGTTTCCAGCTCAACAATCTCATACCACTCTACTTCAAATCCCACTTCCTCCCCTACGCCGTTCGTCTCTTCCAACAAATCCCCTCCCCCAATGTCGTCTCATGGACAACCCTCATCTCCGGCCACTCCGACACTCCCGCCGCCCTCGACCACTTCGTCTCCATGCTCCGTCACCCCACCCTCCCCAACCA...

Protein

Download Protein FASTA

564 aa · TkA04G102120|TK1151|PROTEIN

MKSDPRRIHAQVIKTNTAGTSEYRFQLNNLIPLYFKSHFLPYAVRLFQQIPSPNVVSWTTLISGHSDTPAALDHFVSMLRHPTLPNQRTLATILKTCVSLSSLSFGLQLHALSIKLSLATEPFSASALINFYSKAHLPNNAQNVFDEIPQRDAVCFSSIIVGLAQNSKPIDALSYFSEMRACGFDSTDYSVSAALRASAELAALEQSRMIHAHSVINGLDSNVIVGTALVDTYGKCGMVDDARFIFNELKPILNLIGWNA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G102120
TK1151 IDTkA04G102120
OH-1004 IDLXL04_021986
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)37.000
Protein coverage (%)TK1151 96.454 / OH-1004 81.287
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G102120
LocationChr04:26535313-26537007 (+)
DescriptionSimilar to PCMP-H87: Pentatricopeptide repeat-containing protein At3g24000, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At5g52630 Putative pentatricopeptide repeat-containing protein At5g52630. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At3g13770 Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial. No verified direct reference in this release
At1g68930 Putative pentatricopeptide repeat-containing protein At1g68930. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021986 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G03880
ath:AT3G13770
ath:AT3G23330
ath:AT3G24000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.657
Rank 1 · TkA04G102120 · TK1151
Plastid0.191
Rank 2 · TkA04G102120 · TK1151
Nucleus0.066
Rank 3 · TkA04G102120 · TK1151
Cytoplasm0.039
Rank 4 · TkA04G102120 · TK1151
Cell membrane0.006
Rank 5 · TkA04G102120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_228-49 aa
PF01535PPR33-50 aa
PF29070MSC6_N33-93 aa
PF12854PPR_152-64 aa
PF13041PPR_253-98 aa
PF13812PPR_353-98 aa
PF01535PPR56-66 aa
PF23276TPR_2466-96 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G102120PF13041PPR_228492.5e-29101.9
TkA04G102120PF01535PPR33502.1e-30103.5
TkA04G102120PF29070MSC6_N33931.7e-0731.4
TkA04G102120PF12854PPR_152643e-1762.8
TkA04G102120PF13041PPR_253982.5e-29101.9
TkA04G102120PF13812PPR_353989.6e-0935.9
TkA04G102120PF01535PPR56662.1e-30103.5
TkA04G102120PF23276TPR_2466961.5e-0628.8
TkA04G102120PF17177PPR_long901420.00517.0
TkA04G102120PF01535PPR1261502.1e-30103.5
TkA04G102120PF13041PPR_21271512.5e-29101.9
TkA04G102120PF12854PPR_11271473e-1762.8
TkA04G102120PF14559TPR_191271530.0007220.5
TkA04G102120PF12854PPR_11511803e-1762.8
TkA04G102120PF13041PPR_21521972.5e-29101.9
TkA04G102120PF13812PPR_31521809.6e-0935.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317036.800%Swiss-ProtMedium
Q9LTF4Arabidopsis thalianasp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g5263037.800%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial37.300%Swiss-ProtMedium
Q9LIC3Arabidopsis thalianasp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial34.400%Swiss-ProtMedium
Q9CAA8Arabidopsis thalianasp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g6893038.200%Swiss-ProtMedium

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