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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G102070
Reference: TK1151 Chr: Chr04 Coordinates: 26514225-26515667 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1443 bp · TkA04G102070|TK1151|cDNA

ATGCTCACGTGCAAGCCGGACGCTCTCACGTGCTCCTTCACCCTCAAAGCTTGCGCACGAGCCTTAGCTTGTAACGAAGCGATCCAAATCCATTCACAAGTTATTCGATTTGGATTCATAGCAGACATCCTACTGCAAACCACTTTGCTAGATGTCTACGCAAAATCTGGTTATTTGGACAACGCCCGCAAACTGTTCGACGAAATGTCCAACAGAGATGTCACATGTTGGAATGCAATGATCGCTGGGTTGGCTCAAGG...

CDS

Download CDS FASTA

1443 bp · TkA04G102070|TK1151|CDS

ATGCTCACGTGCAAGCCGGACGCTCTCACGTGCTCCTTCACCCTCAAAGCTTGCGCACGAGCCTTAGCTTGTAACGAAGCGATCCAAATCCATTCACAAGTTATTCGATTTGGATTCATAGCAGACATCCTACTGCAAACCACTTTGCTAGATGTCTACGCAAAATCTGGTTATTTGGACAACGCCCGCAAACTGTTCGACGAAATGTCCAACAGAGATGTCACATGTTGGAATGCAATGATCGCTGGGTTGGCTCAAGG...

Protein

Download Protein FASTA

480 aa · TkA04G102070|TK1151|PROTEIN

MLTCKPDALTCSFTLKACARALACNEAIQIHSQVIRFGFIADILLQTTLLDVYAKSGYLDNARKLFDEMSNRDVTCWNAMIAGLAQGNQPNEALQLFTRMRDLGFKPNEITVLGALSACAQLGVVREGENIYNYIKNQNLEKNEQVCNVVIDMFGKCGYVTKAYQVFNSMKCTKTLITWNTMIMVLATNGESLEALQLFNQMSKEGFRPDNVSYLAVLCACNHAGMVKNGVELFEKMTKDGSVVPNIKHYGTMVDLLGRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G102070
TK1151 IDTkA04G102070
OH-1004 IDLXL04_035863
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 83.189
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G102070
LocationChr04:26514225-26515667 (+)
DescriptionSimilar to PCMP-H68: Pentatricopeptide repeat-containing protein At1g34160
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g34160 Pentatricopeptide repeat-containing protein At1g34160. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At3g47530 Pentatricopeptide repeat-containing protein At3g47530. No verified direct reference in this release
At2g02980 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0270200 Involved in multiple sites RNA editing events in mitochondria.
Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria.2009 · DOI: 10.1111/j.1365-313x.2009.03909.x
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035863 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G34160
ath:AT3G56550
ath:AT4G21065
ath:AT5G06540
dosa:Os12g0270200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.668
Rank 1 · TkA04G102070 · TK1151
Plastid0.177
Rank 2 · TkA04G102070 · TK1151
Nucleus0.064
Rank 3 · TkA04G102070 · TK1151
Cytoplasm0.036
Rank 4 · TkA04G102070 · TK1151
Peroxisome0.007
Rank 5 · TkA04G102070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_24-20 aa
PF17177PPR_long12-171 aa
PF01535PPR15-39 aa
PF13812PPR_336-72 aa
PF13428TPR_1446-73 aa
PF01535PPR47-73 aa
PF13041PPR_247-75 aa
PF12854PPR_147-70 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G102070PF13041PPR_24202.9e-41140.0
TkA04G102070PF17177PPR_long121716.2e-0936.3
TkA04G102070PF01535PPR15391.9e-42141.3
TkA04G102070PF13812PPR_336722e-1557.3
TkA04G102070PF13428TPR_1446731.2e-0526.3
TkA04G102070PF01535PPR47731.9e-42141.3
TkA04G102070PF13041PPR_247752.9e-41140.0
TkA04G102070PF12854PPR_147703.5e-30104.1
TkA04G102070PF23276TPR_2447742.1e-0834.8
TkA04G102070PF29070MSC6_N49903.8e-1246.7
TkA04G102070PF22330Rib_mS39_PPR60860.1312.7
TkA04G102070PF28771RMD9_mid651020.1812.2
TkA04G102070PF13041PPR_2721202.9e-41140.0
TkA04G102070PF12854PPR_1731013.5e-30104.1
TkA04G102070PF13812PPR_3731112e-1557.3
TkA04G102070PF01535PPR761051.9e-42141.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FX24Arabidopsis thalianasp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g3416057.900%Swiss-ProtHigh
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic42.100%Swiss-ProtMedium
Q9SN85Arabidopsis thalianasp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g4753040.700%Swiss-ProtMedium
Q8LK93Arabidopsis thalianasp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980, chloroplastic40.600%Swiss-ProtMedium
B8YEK4Oryza sativa subsp. japonicasp|B8YEK4|OGR1_ORYSJ Pentatricopeptide repeat-containing protein OGR1, mitochondrial54.600%Swiss-ProtHigh

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