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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G100940
Reference: TK1151 Chr: Chr04 Coordinates: 26278080-26281078 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2185 bp · TkA04G100940|TK1151|cDNA

ATCCATTTGTAAGTCCATATTACATATTTATCTATAGTGATAAACAATAAAGGCAAAGCTTCTAAACAGAAAATATTTAAACAAGCAAAAGTTGATAAAATCATAAAACACCAACACCCTGTTGTGGACTTGTGGTACAGAACTGCAGAGTGCAGATTGTAAATTTCTATGCCGAATACACCGAACAGCAAACCAGGTAGCCCAAATTTACACTTTTACTTTTAAGCCAGGTAGTTCAAAAGCCCATTTAATCTTGCTTT...

CDS

Download CDS FASTA

1449 bp · TkA04G100940|TK1151|CDS

ATGTCTCTCCTTCTTCATCATCCATGTTGTAAGTTTCTGCCTCCCTTAGATACCTTCTTTATCTGCAAAACCCCCATTAACAGATTCATTTCTTTCCCTAAACCCCCCAAACACTTCGACAACCTACCTTCTCTTACCAAATACCCAATCTTTAGAACCACCCATGTTGTAAATTGCTCGAATAACGAAGTCATTGATGAATTTACAAACACTCAATTGGACCAAACTCAAGAAAATGAGATCGAAGAGCTTGGATTGTT...

Protein

Download Protein FASTA

482 aa · TkA04G100940|TK1151|PROTEIN

MSLLLHHPCCKFLPPLDTFFICKTPINRFISFPKPPKHFDNLPSLTKYPIFRTTHVVNCSNNEVIDEFTNTQLDQTQENEIEELGLLGKPSPMPISVPPPPEVEDEHIKPQKEEVLEPFYKFFRDGKSVEDTSDSEDVSDEISIEEEEEEDKKVSVEYYDPKQGDFVVGVVVSGNEYKLDVNIGADLLGTMLTKEVLPLYDKELDNLLCDFEKNAEEFFTKGKIGIVRNQEALSGGPVAGQPVVEHGTVLFAEVLGRTLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G100940
TK1151 IDTkA04G100940
OH-1004 IDLXL04_035878
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G100940
LocationChr04:26278080-26281078 (+)
DescriptionSimilar to PDE338: Protein PIGMENT DEFECTIVE 338, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71720 RNA-binding protein that acts as an RNA chaperone to remodel RNA structure and activates their translation.
A novel RNA binding protein affects rbcL gene expression and is specific to bundle sheath chloroplasts in C4 plants.2013 · DOI: 10.1186/1471-2229-13-138
PBR1 selectively controls biogenesis of photosynthetic complexes by modulating translation of the large chloroplast gene Ycf1 in Arabidopsis.2016 · DOI: 10.1038/celldisc.2016.3

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035878 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006412 translation Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009657 plastid organization Biological Process
GO:0010196 nonphotochemical quenching Biological Process
GO:0032544 plastid translation Biological Process
GO:0043489 RNA stabilization Biological Process
GO:0045727 positive regulation of translation Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
KEGG gene cross-reference
ath:AT1G71720
ath:AT5G30510
syc:syc0836_d
syn:slr1356
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.928
Rank 1 · TkA04G100940 · TK1151
Nucleus0.062
Rank 2 · TkA04G100940 · TK1151
Mitochondrion0.054
Rank 3 · TkA04G100940 · TK1151
Cytoplasm0.031
Rank 4 · TkA04G100940 · TK1151
Cell membrane0.017
Rank 5 · TkA04G100940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26008DUF800118-26 aa
PF11081Adeno_L433K_22K98-142 aa
PF21266S1_RRP4159-187 aa
PF00575S1161-185 aa
PF31157RLSB_S1166-274 aa
PF00575S1284-295 aa
PF26008DUF8001286-322 aa
PF00575S1303-328 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G100940PF26008DUF800118261.88.8
TkA04G100940PF11081Adeno_L433K_22K981420.5111.2
TkA04G100940PF21266S1_RRP41591870.1213.3
TkA04G100940PF00575S11611852.1e-1144.7
TkA04G100940PF31157RLSB_S11662742e-56189.7
TkA04G100940PF00575S12842952.1e-1144.7
TkA04G100940PF26008DUF80012863221.88.8
TkA04G100940PF00575S13033282.1e-1144.7
TkA04G100940PF00575S13393982.1e-1144.7
TkA04G100940PF26008DUF80013734011.88.8
TkA04G100940PF11081Adeno_L433K_22K4334700.5111.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M9H4Arabidopsis thalianasp|Q9M9H4|PD338_ARATH Protein PIGMENT DEFECTIVE 338, chloroplastic59.300%Swiss-ProtHigh

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