TkA04G099570 | RubberDandelionOmics

Gene overview

TkA04G099570

Reference: TK1151 Chr: Chr04 Coordinates: 25953648-25959728 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4140 bp · TkA04G099570|TK1151|cDNA

GGCGAGAGGAAAATATCGTTGCCACGTTCGCTGTGTTAGATCCCTAAATTCATACACAACGCGGCTAAAGATCTCCTATATTTTCTCTCTCTAAAACTGTTCATTTTCTCTCTCTAAAAACTATTTTTTGTAAAATATTTCTCTCCTTTACTTCATAATCCCTTGTTTTGGTCTCAATCCTTTAAAATCTCAAATCCTCTCTAAATTTTACAGTCGCTGTAAATCACAACGCCGGAGCCGTTTACCGGCGAAATCTCTCT...

CDS

Download CDS FASTA

3351 bp · TkA04G099570|TK1151|CDS

ATGGCTGCTGCTACATCTGAAAGGTGGATCGATGGTCTACAATTTTCATCACTGTTTTGGCCCCCACCACAAGATCCAGAACAGCGAAAGGCACAAATTACAGCATATGTTGACTACTTTGGTCAATTCACATCAGAACAATTTCCTGAAGATGTTGCTGAGTTGGTCCGCCATCGTTATCCATCCACTGAAAAACGCCTCTTCGATGATGTATTAGCAATGTTTGTCCTTCATCATCCGGAACATGGACATGCTGTGAT...

Protein

Download Protein FASTA

1116 aa · TkA04G099570|TK1151|PROTEIN

MAAATSERWIDGLQFSSLFWPPPQDPEQRKAQITAYVDYFGQFTSEQFPEDVAELVRHRYPSTEKRLFDDVLAMFVLHHPEHGHAVILPIISCIIDGTMEYDRSIPPFASFISLVCPSADNEYSEQWALACGEILRILTHYNRPIFKAERPHGETDHRTKSGSQASTSGESSRSSSPSGQHERKPLRPLSPWITDLLLAAPLGIRSDYFRWCGGVMGKYAAGELKPPSVVMASSRGSGKHPQLMPSTPRWAVANGAGVIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G099570`
TK1151 ID	TkA04G099570
OH-1004 ID	LXL04_030037
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	76.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G099570

Location Chr04:25953648-25959728 (-)

Description Similar to GI: Protein GIGANTEA

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22770`	Involved in regulation of circadian rhythm and photoperiodic flowering.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0182600`	Involved in regulation of circadian rhythm, and in the control of the photoperiodic flowering.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030037 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006950 response to stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009409 response to cold Biological Process

GO:0009585 red, far-red light phototransduction Biological Process

GO:0009637 response to blue light Biological Process

GO:0009908 flower development Biological Process

GO:0010218 response to far red light Biological Process

GO:0010378 temperature compensation of the circadian clock Biological Process

GO:0030154 cell differentiation Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0042752 regulation of circadian rhythm Biological Process

KEGG gene cross-reference

ath:AT1G22770

dosa:Os01g0182600

osa:4325329

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.543

Rank 1 · TkA04G099570 · TK1151

Cytoplasm0.371

Rank 2 · TkA04G099570 · TK1151

Cell membrane0.067

Rank 3 · TkA04G099570 · TK1151

Golgi apparatus0.066

Rank 4 · TkA04G099570 · TK1151

Endoplasmic reticulum0.054

Rank 5 · TkA04G099570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30924GIGANTEA_N6-408 aa

PF30921GIGANTEA_M465-788 aa

PF28518GIGANTEA_C726-757 aa

PF28518GIGANTEA_C829-1113 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G099570	`PF30924`	GIGANTEA_N	6	408	4.7e-247	820.0
TkA04G099570	`PF30921`	GIGANTEA_M	465	788	8.6e-174	578.4
TkA04G099570	`PF28518`	GIGANTEA_C	726	757	7.4e-140	465.8
TkA04G099570	`PF28518`	GIGANTEA_C	829	1113	7.4e-140	465.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SQI2`	Arabidopsis thaliana	sp\|Q9SQI2\|GIGAN_ARATH Protein GIGANTEA	68.900%	Swiss-Prot	High
`Q9AWL7`	Oryza sativa subsp. japonica	sp\|Q9AWL7\|GIGAN_ORYSJ Protein GIGANTEA	66.500%	Swiss-Prot	High

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