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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G098140
Reference: TK1151 Chr: Chr04 Coordinates: 25571630-25572461 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

671 bp · TkA04G098140|TK1151|cDNA

ATGACTGCAAAAAACCCTAATCTATGGTGGCTTGCTTACTTTATACATGCTCATAATACAAATCCACTCCAAAAACTGATTGGAAAACTTGTCAATCAGGCTCAAGCAAAGAAGCAATCATTTTCCTCCCTTGATGAACTACTGGAAAAAGCCGAGAAGCCAGTGCTGGTCGACTTTTATGCGACCTGGTGTGGGCCATGTCAATTTATGGGTCCTATACTGAATGAAGTTAGTATCACCATGGGAGACGCTCTCCAAGT...

CDS

Download CDS FASTA

432 bp · TkA04G098140|TK1151|CDS

ATGACTGCAAAAAACCCTAATCTATGGTGGCTTGCTTACTTTATACATGCTCATAATACAAATCCACTCCAAAAACTGATTGGAAAACTTGTCAATCAGGCTCAAGCAAAGAAGCAATCATTTTCCTCCCTTGATGAACTACTGGAAAAAGCCGAGAAGCCAGTGCTGGTCGACTTTTATGCGACCTGGTGTGGGCCATGTCAATTTATGGGTCCTATACTGAATGAAGTTAGTATCACCATGGGAGACGCTCTCCAAGT...

Protein

Download Protein FASTA

143 aa · TkA04G098140|TK1151|PROTEIN

MTAKNPNLWWLAYFIHAHNTNPLQKLIGKLVNQAQAKKQSFSSLDELLEKAEKPVLVDFYATWCGPCQFMGPILNEVSITMGDALQVVKIDTEKYPEIANKYSIEALPTFILFKDGKPCDRFEGALTANQLIQRIEGTLKVEN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G098140
TK1151 IDTkA04G098140
OH-1004 IDLXL04_035897
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 76.923 / OH-1004 62.500
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G098140
LocationChr04:25571630-25572461 (+)
DescriptionSimilar to Os01g0963400: Thioredoxin Y, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g76760 Thiol-disulfide oxidoreductase that poorly activates chloroplastic malate dehydrogenase (NADP-MDH) and fructose-1,6-bisphosphatase. No verified direct reference in this release
At1g43560 Thiol-disulfide oxidoreductase that poorly activates chloroplastic malate dehydrogenase (NADP-MDH) and fructose-1,6-bisphosphatase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0963400 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035897 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009416 response to light stimulus Biological Process
GO:0043085 positive regulation of catalytic activity Biological Process
GO:0045454 cell redox homeostasis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0008047 enzyme activator activity Molecular Function
GO:0015035 protein-disulfide reductase activity Molecular Function
KEGG gene cross-reference
ath:AT1G43560
ath:AT1G50320
ath:AT1G76760
dosa:Os01g0963400
osa:4324458
syn:slr0233
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.428
Rank 1 · TkA04G098140 · TK1151
Plastid0.192
Rank 2 · TkA04G098140 · TK1151
Cytoplasm0.182
Rank 3 · TkA04G098140 · TK1151
Endoplasmic reticulum0.109
Rank 4 · TkA04G098140 · TK1151
Extracellular0.077
Rank 5 · TkA04G098140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13728TraF9-135 aa
PF13905Thioredoxin_812-34 aa
PF07689KaiB21-36 aa
PF07449HyaE29-118 aa
PF20207PedC-like30-59 aa
PF00085Thioredoxin42-136 aa
PF13899Thioredoxin_747-70 aa
PF14595Thioredoxin_948-115 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G098140PF13728TraF91352.1e-0628.5
TkA04G098140PF13905Thioredoxin_812343.6e-0524.8
TkA04G098140PF07689KaiB21360.00119.5
TkA04G098140PF07449HyaE291180.003618.0
TkA04G098140PF20207PedC-like30590.003917.9
TkA04G098140PF00085Thioredoxin421361.6e-2796.2
TkA04G098140PF13899Thioredoxin_747703.5e-0524.5
TkA04G098140PF14595Thioredoxin_9481150.003717.9
TkA04G098140PF13098Thioredoxin_2491368.6e-1039.7
TkA04G098140PF03190Thioredox_DsbH491030.0116.5
TkA04G098140PF08534Redoxin50720.08113.4
TkA04G098140PF26981Thioredoxin-like_PDI511100.00617.2
TkA04G098140PF13905Thioredoxin_853903.6e-0524.8
TkA04G098140PF20207PedC-like551230.003917.9
TkA04G098140PF07689KaiB851340.00119.5
TkA04G098140PF13905Thioredoxin_8921143.6e-0524.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6NPF9Arabidopsis thalianasp|Q6NPF9|TRXY1_ARATH Thioredoxin Y1, chloroplastic77.800%Swiss-ProtHigh
Q8L7S9Arabidopsis thalianasp|Q8L7S9|TRXY2_ARATH Thioredoxin Y2, chloroplastic73.800%Swiss-ProtHigh
Q5JMR9Oryza sativa subsp. japonicasp|Q5JMR9|TRXY_ORYSJ Thioredoxin Y, chloroplastic78.500%Swiss-ProtHigh

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