RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G081400
Reference: TK1151 Chr: Chr04 Coordinates: 21372025-21375147 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1809 bp · TkA04G081400|TK1151|cDNA

ATGATAACCCAGTTCTTCTTTCAGATTTTGTTGATCAGCTTTTACCTGATCATGTTTGGGGTTAATTCTATATTGGTTTCTGACCAATGTCAAACTGGCCATCAAACAATTTTGATCAAGTTAAAGAGAGAATTACGGTTCAACTCTTCAACAAAATTAGTGTCTTGGAACCCAAATGCCTCACATTGTTGCACCTGGGTAGGTGTTGAATGCGGCATCGGAGGTGAGGTTATTGGTCTAGATTTAAGCAATGAAAGTAT...

CDS

Download CDS FASTA

1809 bp · TkA04G081400|TK1151|CDS

ATGATAACCCAGTTCTTCTTTCAGATTTTGTTGATCAGCTTTTACCTGATCATGTTTGGGGTTAATTCTATATTGGTTTCTGACCAATGTCAAACTGGCCATCAAACAATTTTGATCAAGTTAAAGAGAGAATTACGGTTCAACTCTTCAACAAAATTAGTGTCTTGGAACCCAAATGCCTCACATTGTTGCACCTGGGTAGGTGTTGAATGCGGCATCGGAGGTGAGGTTATTGGTCTAGATTTAAGCAATGAAAGTAT...

Protein

Download Protein FASTA

602 aa · TkA04G081400|TK1151|PROTEIN

MITQFFFQILLISFYLIMFGVNSILVSDQCQTGHQTILIKLKRELRFNSSTKLVSWNPNASHCCTWVGVECGIGGEVIGLDLSNESIYGGIDGFSALFGIETLQVLNLARNNFHFTQIPSGFGNITSLKNLNLSNSGFSGQIPGELSQLTNLDTLDLSNNKLEGQIPMSFFELGRLHMLLLSSNNLSGLIEIKDIQGLSNLTTLDLSFNNLSIGTSSNISTLYHFPQVFSLKLAHCNLQKFPNLRNQLRLNTLDLSDNKI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G081400
TK1151 IDTkA04G081400
OH-1004 IDLXL04_036054
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)51.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G081400
LocationChr04:21372025-21375147 (+)
DescriptionSimilar to RLP6: Receptor-like protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g32660 Receptor like protein 22. No verified direct reference in this release
At2g32680 Involved in the perception of necrosis and ethylene-inducing peptide 1-like proteins (NLPs), that act as extracellular signals mediating immune activation.
An RLP23-SOBIR1-BAK1 complex mediates NLP-triggered immunity.2015 · DOI: 10.1038/nplants.2015.140
At5g25910 Required for defense against powdery mildew pathogen. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036054 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G45616
ath:AT1G47890
ath:AT3G05660
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.873
Rank 1 · TkA04G081400 · TK1151
Endoplasmic reticulum0.088
Rank 2 · TkA04G081400 · TK1151
Cytoplasm0.056
Rank 3 · TkA04G081400 · TK1151
Nucleus0.041
Rank 4 · TkA04G081400 · TK1151
Lysosome / Vacuole0.023
Rank 5 · TkA04G081400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_237-71 aa
PF24048LRR_NXF1-576-114 aa
PF14580LRR_981-160 aa
PF24758LRR_At5g5637095-139 aa
PF13855LRR_896-135 aa
PF23598LRR_1497-205 aa
PF13855LRR_8102-162 aa
PF12799LRR_4102-136 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G081400PF08263LRRNT_237715e-0833.8
TkA04G081400PF24048LRR_NXF1-5761140.2411.7
TkA04G081400PF14580LRR_9811600.04614.0
TkA04G081400PF24758LRR_At5g56370951397.5e-0523.2
TkA04G081400PF13855LRR_8961357.2e-31106.5
TkA04G081400PF23598LRR_14972051.5e-2074.0
TkA04G081400PF13855LRR_81021627.2e-31106.5
TkA04G081400PF12799LRR_41021361.2e-2486.5
TkA04G081400PF13516LRR_61021135.4e-0729.9
TkA04G081400PF00560LRR_11031248.4e-41129.9
TkA04G081400PF29594LRR_SKP21031580.02914.4
TkA04G081400PF25013LRR_Zer-11231340.0003921.3
TkA04G081400PF23952LRR_EndoS1231600.02715.4
TkA04G081400PF24048LRR_NXF1-51241860.2411.7
TkA04G081400PF12799LRR_41261621.2e-2486.5
TkA04G081400PF13516LRR_61261385.4e-0729.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O48851Arabidopsis thalianasp|O48851|RLP22_ARATH Receptor like protein 2246.200%Swiss-ProtLow
O48849Arabidopsis thalianasp|O48849|RLP23_ARATH Receptor like protein 2335.200%Swiss-ProtLow
Q7FZR1Arabidopsis thalianasp|Q7FZR1|RLP52_ARATH Receptor-like protein 5230.900%Swiss-ProtLow

JBrowse

View in Genome Browser