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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G078440
Reference: TK1151 Chr: Chr04 Coordinates: 20592657-20604128 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1899 bp · TkA04G078440|TK1151|cDNA

ATGATAACCCAGTTCTTCTTTCAGATTTTGTTGATCAGCTTTTACCTGATCATGTTTGGGGTTAATTCTATATTGGTTTCTGACCAATGTCAAACTGGCCATCAAACAATTTTGATCAAGTTAAAGAGAGAATTACAGTTCAACTCTTCAACCAAATTAGTGTCTTGGAACCCAAATGCCTCACATTGTTGCACCTGGGTAGGTGTTGAATGCGGCATCGGAGGTGAGGTTATTGGTCTAGATTTAAGCAATGAAAGTAT...

CDS

Download CDS FASTA

1899 bp · TkA04G078440|TK1151|CDS

ATGATAACCCAGTTCTTCTTTCAGATTTTGTTGATCAGCTTTTACCTGATCATGTTTGGGGTTAATTCTATATTGGTTTCTGACCAATGTCAAACTGGCCATCAAACAATTTTGATCAAGTTAAAGAGAGAATTACAGTTCAACTCTTCAACCAAATTAGTGTCTTGGAACCCAAATGCCTCACATTGTTGCACCTGGGTAGGTGTTGAATGCGGCATCGGAGGTGAGGTTATTGGTCTAGATTTAAGCAATGAAAGTAT...

Protein

Download Protein FASTA

632 aa · TkA04G078440|TK1151|PROTEIN

MITQFFFQILLISFYLIMFGVNSILVSDQCQTGHQTILIKLKRELQFNSSTKLVSWNPNASHCCTWVGVECGIGGEVIGLDLSNESIYGGIDGFSALFRIETLQVLNLARNNFHFTQIPSGLGNITSLKNLNLSNSNFSGQIPGELSQLTNLDTLDLSNNKLEGQIPMSFFELGRLHMLLLSSNNLSGLIEIKDIQGLSNLTTLDLSFNNLSIGTSSNISTLYHFPQVFSLKLAHCNLQKFPNLQNQLRLNTLDLSDNKI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G078440
TK1151 IDTkA04G078440
OH-1004 IDLXL04_036054
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)46.500
Protein coverage (%)TK1151 93.354 / OH-1004 99.231
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G078440
LocationChr04:20592657-20604128 (-)
DescriptionSimilar to RLP6: Receptor-like protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g45616 Receptor-like protein 6. No verified direct reference in this release
At2g32660 Receptor like protein 22. No verified direct reference in this release
At1g47890 Receptor-like protein 7. No verified direct reference in this release
At5g25910 Required for defense against powdery mildew pathogen. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036054 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G45616
ath:AT1G47890
ath:AT3G05660
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.874
Rank 1 · TkA04G078440 · TK1151
Endoplasmic reticulum0.089
Rank 2 · TkA04G078440 · TK1151
Cytoplasm0.057
Rank 3 · TkA04G078440 · TK1151
Nucleus0.045
Rank 4 · TkA04G078440 · TK1151
Lysosome / Vacuole0.022
Rank 5 · TkA04G078440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_237-71 aa
PF24048LRR_NXF1-576-114 aa
PF14580LRR_980-160 aa
PF24758LRR_At5g5637094-140 aa
PF23598LRR_1495-205 aa
PF25013LRR_Zer-198-137 aa
PF23211LRR_LRWD1100-162 aa
PF13855LRR_8102-162 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G078440PF08263LRRNT_237712.7e-0834.7
TkA04G078440PF24048LRR_NXF1-5761140.6810.3
TkA04G078440PF14580LRR_9801600.02414.9
TkA04G078440PF24758LRR_At5g56370941400.0008719.7
TkA04G078440PF23598LRR_14952052.7e-2176.4
TkA04G078440PF25013LRR_Zer-1981376.1e-0523.9
TkA04G078440PF23211LRR_LRWD11001620.0009419.7
TkA04G078440PF13855LRR_81021621.5e-31108.6
TkA04G078440PF12799LRR_41021428.9e-2690.1
TkA04G078440PF13516LRR_61021131.2e-0525.7
TkA04G078440PF29594LRR_SKP21021580.1512.0
TkA04G078440PF00560LRR_11031244.2e-40127.8
TkA04G078440PF24048LRR_NXF1-51031600.6810.3
TkA04G078440PF23952LRR_EndoS1211600.00219.0
TkA04G078440PF24048LRR_NXF1-51241860.6810.3
TkA04G078440PF12799LRR_41261628.9e-2690.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C637Arabidopsis thalianasp|Q9C637|RLP6_ARATH Receptor-like protein 636.100%Swiss-ProtLow
O48851Arabidopsis thalianasp|O48851|RLP22_ARATH Receptor like protein 2246.200%Swiss-ProtLow
Q9C699Arabidopsis thalianasp|Q9C699|RLP7_ARATH Receptor-like protein 747.300%Swiss-ProtLow
Q7FZR1Arabidopsis thalianasp|Q7FZR1|RLP52_ARATH Receptor-like protein 5230.600%Swiss-ProtLow

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