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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G076480
Reference: TK1151 Chr: Chr04 Coordinates: 20116295-20120953 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3521 bp · TkA04G076480|TK1151|cDNA

ATTTTTCTCTCCACTTGATGATAATAAAAGGAATTTTGGAGTTGAATTATTATCATCGACTTATCCCACTCCCAACCGGTTCATATGGCCATGGTATCAAGATCTCATCCAATCATCCATCTTCTTCCATGGCTGCTTCTCCAGTTTGTTTTACTTATGATATTTTTCTAAGTTTTCGAGGTGAAGACACCCGTAAGACATTTACAGATTTTTTGTATGCCGCCATGAAGCAAGCAGGAATCCGCACTTTTAGGGATGAT...

CDS

Download CDS FASTA

3315 bp · TkA04G076480|TK1151|CDS

ATGATAATAAAAGGAATTTTGGAGTTGAATTATTATCATCGACTTATCCCACTCCCAACCGGTTCATATGGCCATGGTATCAAGATCTCATCCAATCATCCATCTTCTTCCATGGCTGCTTCTCCAGTTTGTTTTACTTATGATATTTTTCTAAGTTTTCGAGGTGAAGACACCCGTAAGACATTTACAGATTTTTTGTATGCCGCCATGAAGCAAGCAGGAATCCGCACTTTTAGGGATGATGATGCGTTGGAAAGAGG...

Protein

Download Protein FASTA

1104 aa · TkA04G076480|TK1151|PROTEIN

MIIKGILELNYYHRLIPLPTGSYGHGIKISSNHPSSSMAASPVCFTYDIFLSFRGEDTRKTFTDFLYAAMKQAGIRTFRDDDALERGKLLKPELKKAVQQSAISLIVFSKNYASSKWCLDEVSMIIEEHETLFSKHEVVPVFYNVDPSDVRHQKGSFKEAFDGFDDIIKAETNLEEKTRWLEKVGAWRDSLRKAANFAGMVSTDGYEAKFVNDIVNVIRKKLDYKTLYIEEKLVGINENVSVTESWLQDPSPNAVILFID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G076480
TK1151 IDTkA04G076480
OH-1004 IDLXL04_001293
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)63.300
Protein coverage (%)TK1151 93.388 / OH-1004 98.941
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G076480
LocationChr04:20116295-20120953 (-)
DescriptionSimilar to RUN1: Disease resistance protein RUN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g64070 TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Leptosphaeria maculans (blackleg disease).
Transgressive segregation reveals two Arabidopsis TIR-NB-LRR resistance genes effective against Leptosphaeria maculans, causal agent of blackleg disease.2006 · DOI: 10.1111/j.1365-313x.2006.02688.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001293 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0050135 NADP+ nucleosidase activity Molecular Function
GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.459
Rank 1 · TkA04G076480 · TK1151
Nucleus0.315
Rank 2 · TkA04G076480 · TK1151
Cell membrane0.299
Rank 3 · TkA04G076480 · TK1151
Endoplasmic reticulum0.084
Rank 4 · TkA04G076480 · TK1151
Plastid0.038
Rank 5 · TkA04G076480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582TIR47-227 aa
PF13676TIR_249-148 aa
PF13173AAA_14107-125 aa
PF24883NPHP3_N243-324 aa
PF00931NB-ARC246-412 aa
PF01637ATPase_2253-353 aa
PF13191AAA_16255-348 aa
PF13173AAA_14256-357 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G076480PF01582TIR472272.6e-41142.1
TkA04G076480PF13676TIR_2491487.1e-1453.1
TkA04G076480PF13173AAA_141071250.03514.8
TkA04G076480PF24883NPHP3_N2433240.000421.3
TkA04G076480PF00931NB-ARC2464124.7e-1762.8
TkA04G076480PF01637ATPase_22533530.0002621.6
TkA04G076480PF13191AAA_162553480.2612.5
TkA04G076480PF13173AAA_142563570.03514.8
TkA04G076480PF20720nSTAND32562960.04514.1
TkA04G076480PF24883NPHP3_N4605080.000421.3
TkA04G076480PF23282WHD_ROQ14815494.3e-2072.4
TkA04G076480PF13855LRR_86176331.6e-0938.1
TkA04G076480PF23598LRR_146176813.6e-0523.4
TkA04G076480PF12799LRR_46566786.3e-1039.7
TkA04G076480PF23247LRR_RPS26656930.002518.5
TkA04G076480PF25019LRR_R13L1-DRL216657230.003418.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4I594Arabidopsis thalianasp|F4I594|RLM1A_ARATH Disease resistance protein RML1A29.800%Swiss-ProtLow

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