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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G059020
Reference: TK1151 Chr: Chr04 Coordinates: 15744468-15746171 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1259 bp · TkA04G059020|TK1151|cDNA

AAAGAAATGGGGATATATTGATGCCACCGAGGAGCTGCAGTTGACATTTTTGTACGTTGTTTCCGCGAAAGAGGGGCTCCGCCGTCTTCTCTTCCGTTCTGGAATTTGGACTGTTCGATTCCGGGCAGAGAAGAAGACTTTGAACGCGGAGTCTGAATCACATACGCTTGCATGTACATCGAAACTTCAATATTTATCATTCTTCAAATATAAGGAAACAAAAACAATTTTTTTTTGTTTTTGTTTTTGGTAAAAGTAAT...

CDS

Download CDS FASTA

855 bp · TkA04G059020|TK1151|CDS

ATGGGGACGCCGGCAATCCCAAATCTGGGAGAACAATGCTCCGTTATAGATTGTAAGCTCATAGATTTCCTTCCGTTCACCTGCGATTGTTGCAACAAGGTTTTTTGTCTAGAACATCGTAGTTACAGCACACACGAATGCCCAAACGCCAACAAAAACGACATCACAGTTGTCATCTGTCCACTATGCGCAAAAGGAGTTCATTTAATCCCAAATCAAGACCCCAACATCACATGGGAATCACACGTCAACACCGACTG...

Protein

Download Protein FASTA

284 aa · TkA04G059020|TK1151|PROTEIN

MGTPAIPNLGEQCSVIDCKLIDFLPFTCDCCNKVFCLEHRSYSTHECPNANKNDITVVICPLCAKGVHLIPNQDPNITWESHVNTDCDPSNYEKATKKKKCPVLRCKETLTFSNTIKCRDCTIDHCLKHRFGPDHSCPGPKKPEPTFSFWDRKKKDPPPKRATRVPEHGSGSSSKWGNGFLKAASSGIAKLGNDIGQVFQGGKDGGVGVGPGGSGGGDTVEVCPVCNVKFSRVGDLIDHVQNVHEKKKVMNVTLDVCPKC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G059020
TK1151 IDTkA04G059020
OH-1004 IDLXL04_000375
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)67.100
Protein coverage (%)TK1151 98.944 / OH-1004 99.606
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G059020
LocationChr04:15744468-15746171 (+)
DescriptionSimilar to SAP11: Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41835 May be involved in environmental stress response. No verified direct reference in this release
At3g57480 May be involved in environmental stress response. No verified direct reference in this release
At3g28210 May be involved in environmental stress response. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0569700 May be involved in environmental stress response. No verified direct reference in this release
Os09g0385700 May be involved in environmental stress response. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000375 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0097501 stress response to metal ion Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G41835
ath:AT3G28210
ath:AT3G57480
dosa:Os07g0569700
dosa:Os09g0385700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.663
Rank 1 · TkA04G059020 · TK1151
Nucleus0.303
Rank 2 · TkA04G059020 · TK1151
Golgi apparatus0.089
Rank 3 · TkA04G059020 · TK1151
Cell membrane0.085
Rank 4 · TkA04G059020 · TK1151
Endoplasmic reticulum0.077
Rank 5 · TkA04G059020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01428zf-AN113-52 aa
PF00096zf-C2H226-36 aa
PF13894zf-C2H2_426-45 aa
PF05605zf-Di1926-67 aa
PF12874zf-met26-35 aa
PF02928zf-C5HC226-52 aa
PF12171zf-C2H2_jaz26-35 aa
PF13912zf-C2H2_626-35 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G059020PF01428zf-AN113523.1e-1969.5
TkA04G059020PF00096zf-C2H226361.5e-0525.9
TkA04G059020PF13894zf-C2H2_426453.2e-0525.0
TkA04G059020PF05605zf-Di1926670.0001622.5
TkA04G059020PF12874zf-met26350.01516.3
TkA04G059020PF02928zf-C5HC226520.06114.3
TkA04G059020PF12171zf-C2H2_jaz26350.2712.2
TkA04G059020PF13912zf-C2H2_626350.4911.2
TkA04G059020PF23108Zf-C2H2_ZNF45126330.5310.8
TkA04G059020PF29496Teflon_C26351.19.7
TkA04G059020PF23107Zf-C2H2_ZNF451_C41670.004818.2
TkA04G059020PF01428zf-AN151653.1e-1969.5
TkA04G059020PF25403zf-C2H2_ZFAND256943.8e-1865.9
TkA04G059020PF14369Zn_ribbon_1956660.05414.4
TkA04G059020PF13894zf-C2H2_459653.2e-0525.0
TkA04G059020PF16293zf-C2H2_959630.01316.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VZ42Arabidopsis thalianasp|Q8VZ42|SAP11_ARATH Zinc finger AN1 and C2H2 domain-containing stress-associated protein 1159.400%Swiss-ProtHigh
Q9SCM4Arabidopsis thalianasp|Q9SCM4|SAP13_ARATH Zinc finger AN1 and C2H2 domain-containing stress-associated protein 1359.200%Swiss-ProtHigh
Q67YE6Arabidopsis thalianasp|Q67YE6|SAP12_ARATH Zinc finger AN1 domain-containing stress-associated protein 1249.600%Swiss-ProtLow
Q0D5B9Oryza sativa subsp. japonicasp|Q0D5B9|SAP16_ORYSJ Zinc finger AN1 and C2H2 domain-containing stress-associated protein 1654.700%Swiss-ProtHigh
Q6H595Oryza sativa subsp. japonicasp|Q6H595|SAP17_ORYSJ Zinc finger AN1 domain-containing stress-associated protein 1746.500%Swiss-ProtLow

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