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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G052550
Reference: TK1151 Chr: Chr04 Coordinates: 14089953-14094197 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4165 bp · TkA04G052550|TK1151|cDNA

CCTGGCGATTAGATTCTGTTCAGAAATAAAATAGTTTCTTATTTCATTATTTCTCGTTTATTACCACTAAATACCCAATCATCCTTACGTGGAAGACCCACCAACGGCTACTTTCTTTTAATAATCCGACCGTTTATTTTCGAAGCCACAAAGTCCACCCTTTTCAATCTTAACGGCAGCCTGGGCCTACCGTTTGTCGCCGTAAGTCCAGATCAATATATCTTGACCGCATGATTTCAATAAGTAAACGGCTGAGATCA...

CDS

Download CDS FASTA

3525 bp · TkA04G052550|TK1151|CDS

ATGGTGCTTGATCGTAATTCTCCGTCGTCGTCTCCGGTGAGAATCACAGTTTCTTCCTCCGGCGGGTTTCGAAATGTAGGCTTGACAAGTCCCGTGCGGCGAGCTTCTATTTCAAATTCTCCACTTAGCGGTGGGGAAATCAAGCGGTTGAGCGGTGGAAGACGAGGTTCCGGCGTCAGTGGCGGTGGTGCAGGGAGGTATCTTTCTATGTCCAAGGATGAAAGCGATGAATATGTTGCTTACACTGTTCAAATCCCTCC...

Protein

Download Protein FASTA

1174 aa · TkA04G052550|TK1151|PROTEIN

MVLDRNSPSSSPVRITVSSSGGFRNVGLTSPVRRASISNSPLSGGEIKRLSGGRRGSGVSGGGAGRYLSMSKDESDEYVAYTVQIPPTPEHHFMSNSLTSSEYSEVHGNPNENRIKDTVFTGGFNSETRAHARRMKSVEEIVASKSKLLCQVDGCDEKLLDKSSKAQCECGFRICNECYVDYCSSRGGVCPGCKEPFREAGEDEDDDDCQPIMSEEKDTLNPLRRNRGGIKLENNFSLVRSFKAPNQEFDHTRWLFETNG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G052550
TK1151 IDTkA04G052550
OH-1004 IDLXL04_036358
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G052550
LocationChr04:14089953-14094197 (+)
DescriptionSimilar to CSLD5: Cellulose synthase-like protein D5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g02730 Involved in stem and root growth.
Disruption of ATCSLD5 results in reduced growth, reduced xylan and homogalacturonan synthase activity and altered xylan occurrence in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03281.x
At3g03050 Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.
AtCSLD3, a cellulose synthase-like gene important for root hair growth in arabidopsis.2001 · DOI: 10.1104/pp.126.2.575
At5g16910 Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0555600 Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. No verified direct reference in this release
UniProt: A2ZAK8 Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036358 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000919 cell plate assembly Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009625 response to insect Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009833 plant-type primary cell wall biogenesis Biological Process
GO:0030244 cellulose biosynthetic process Biological Process
GO:0042546 cell wall biogenesis Biological Process
GO:0048367 shoot system development Biological Process
GO:0048767 root hair elongation Biological Process
GO:0071555 cell wall organization Biological Process
KEGG gene cross-reference
ath:AT1G02730
ath:AT3G03050
ath:AT5G16910
dosa:Os10g0578200
dosa:Os12g0555600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.529
Rank 1 · TkA04G052550 · TK1151
Endoplasmic reticulum0.204
Rank 2 · TkA04G052550 · TK1151
Golgi apparatus0.154
Rank 3 · TkA04G052550 · TK1151
Cytoplasm0.141
Rank 4 · TkA04G052550 · TK1151
Nucleus0.095
Rank 5 · TkA04G052550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28309LIC11073120-196 aa
PF05290Baculo_IE-1149-202 aa
PF14570zf-RING_4152-197 aa
PF21363TRAF3_RING164-193 aa
PF14569zf-UDP166-201 aa
PF13632Glyco_trans_2_3311-327 aa
PF05290Baculo_IE-1345-367 aa
PF13641Glyco_tranf_2_3392-430 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G052550PF28309LIC110731201961.19.7
TkA04G052550PF05290Baculo_IE-11492020.002618.5
TkA04G052550PF14570zf-RING_41521974e-0936.8
TkA04G052550PF21363TRAF3_RING1641931.39.5
TkA04G052550PF14569zf-UDP1662014.28.2
TkA04G052550PF13632Glyco_trans_2_33113272.8e-0628.0
TkA04G052550PF05290Baculo_IE-13453670.002618.5
TkA04G052550PF13641Glyco_tranf_2_33924300.003317.9
TkA04G052550PF03552Cellulose_synt39411601164.2
TkA04G052550PF13632Glyco_trans_2_36487692.8e-0628.0
TkA04G052550PF13632Glyco_trans_2_38639902.8e-0628.0
TkA04G052550PF13641Glyco_tranf_2_38699180.003317.9
TkA04G052550PF19393DUF596895710060.05214.4
TkA04G052550PF19393DUF5968109611560.05214.4
TkA04G052550PF13632Glyco_trans_2_3110311532.8e-0628.0
TkA04G052550PF13253DUF4044113611531.19.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SRW9Arabidopsis thalianasp|Q9SRW9|CSLD5_ARATH Cellulose synthase-like protein D567.600%Swiss-ProtHigh
Q9M9M4Arabidopsis thalianasp|Q9M9M4|CSLD3_ARATH Cellulose synthase-like protein D361.500%Swiss-ProtHigh
Q9LFL0Arabidopsis thalianasp|Q9LFL0|CSLD2_ARATH Cellulose synthase-like protein D260.400%Swiss-ProtHigh
Q2QNS6Oryza sativa subsp. japonicasp|Q2QNS6|CSLD4_ORYSJ Cellulose synthase-like protein D461.400%Swiss-ProtHigh
A2ZAK8Oryza sativa subsp. indicasp|A2ZAK8|CSLD1_ORYSI Cellulose synthase-like protein D160.500%Swiss-ProtHigh

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