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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G049650
Reference: TK1151 Chr: Chr04 Coordinates: 13326950-13328098 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1080 bp · TkA04G049650|TK1151|cDNA

ATGCCAACAGCGTCGTATTGGTGTTATCGATGCACACGCTTTGTCAGAGTAGCGGAAGCGGACACGGTTGTGTGCCCCCACTGCGAGGGAGGATTTATTGAAGTTGTGGAGGCCAACGCGCCGCCACCTGCGATGTACATGCTCCGCAACAATGATCGGTCAGATCTGAGATTCAGGCGTCGTGGTAGACGTAACAACGGCGACTGGTCTCCTTTCAATCCGGTCATCGTCCTTCGCAGTGTCGCTGAAGAGAGTGGTTT...

CDS

Download CDS FASTA

1080 bp · TkA04G049650|TK1151|CDS

ATGCCAACAGCGTCGTATTGGTGTTATCGATGCACACGCTTTGTCAGAGTAGCGGAAGCGGACACGGTTGTGTGCCCCCACTGCGAGGGAGGATTTATTGAAGTTGTGGAGGCCAACGCGCCGCCACCTGCGATGTACATGCTCCGCAACAATGATCGGTCAGATCTGAGATTCAGGCGTCGTGGTAGACGTAACAACGGCGACTGGTCTCCTTTCAATCCGGTCATCGTCCTTCGCAGTGTCGCTGAAGAGAGTGGTTT...

Protein

Download Protein FASTA

359 aa · TkA04G049650|TK1151|PROTEIN

MPTASYWCYRCTRFVRVAEADTVVCPHCEGGFIEVVEANAPPPAMYMLRNNDRSDLRFRRRGRRNNGDWSPFNPVIVLRSVAEESGFELYYDDGAGAGLQPLPAMMSEFLMGSGFDRLLEQLSQIDINGLSHSEQPPASKAAVESMPAIEVSNSHVSTESHCAICIEPFALGAEAREMPCKHFYHTDCILPWLTMRNSCPVCRHELPTDSTESSSSNLEHSEPNGEESPAVGLTIWRLPGGGFAVGRFTGGRRTGNSERE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G049650
TK1151 IDTkA04G049650
OH-1004 IDLXL04_036405
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)92.200
Protein coverage (%)TK1151 82.730 / OH-1004 96.386
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G049650
LocationChr04:13326950-13328098 (-)
DescriptionSimilar to DURF2: E3 ubiquitin-protein ligase RDUF2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g59550 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid-dependent drought stress responses.
Suppression of Arabidopsis RING-DUF1117 E3 ubiquitin ligases, AtRDUF1 and AtRDUF2, reduces tolerance to ABA-mediated drought stress.2012 · DOI: 10.1016/j.bbrc.2012.02.131
At3g46620 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid-dependent drought stress responses.
Suppression of Arabidopsis RING-DUF1117 E3 ubiquitin ligases, AtRDUF1 and AtRDUF2, reduces tolerance to ABA-mediated drought stress.2012 · DOI: 10.1016/j.bbrc.2012.02.131
The E3 ligase AtRDUF1 positively regulates salt stress responses in Arabidopsis thaliana.2013 · DOI: 10.1371/journal.pone.0071078
At2g39720 Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. No verified direct reference in this release
At3g56580 E3 ubiquitin-protein ligase that promotes osmotic stress and abscisic acid (ABA) responses.
The atrzf1 mutation of the novel RING-type E3 ubiquitin ligase increases proline contents and enhances drought tolerance in Arabidopsis.2013 · DOI: 10.1016/j.plantsci.2012.12.007
PCA22 acts as a suppressor of atrzf1 to mediate proline accumulation in response to abiotic stress in Arabidopsis.2017 · DOI: 10.1093/jxb/erx069
At2g40830 Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036405 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006970 response to osmotic stress Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0047484 regulation of response to osmotic stress Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0090378 seed trichome elongation Biological Process
GO:1902006 negative regulation of L-proline biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT2G39720
ath:AT3G46620
ath:AT3G56580
ath:AT5G59550
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.505
Rank 1 · TkA04G049650 · TK1151
Nucleus0.357
Rank 2 · TkA04G049650 · TK1151
Cell membrane0.121
Rank 3 · TkA04G049650 · TK1151
Endoplasmic reticulum0.112
Rank 4 · TkA04G049650 · TK1151
Golgi apparatus0.094
Rank 5 · TkA04G049650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09723Zn_ribbon_81-30 aa
PF01155HypA4-37 aa
PF14369Zn_ribbon_195-34 aa
PF03604Zn_ribbon_RPAB45-28 aa
PF06827zf-FPG_IleRS5-11 aa
PF29452FAR1_N5-29 aa
PF12773DZR5-29 aa
PF18717CxC46-33 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G049650PF09723Zn_ribbon_81300.05314.3
TkA04G049650PF01155HypA4370.2112.4
TkA04G049650PF14369Zn_ribbon_195341.8e-1247.9
TkA04G049650PF03604Zn_ribbon_RPAB45281.19.3
TkA04G049650PF06827zf-FPG_IleRS5114.08.1
TkA04G049650PF29452FAR1_N5296.47.6
TkA04G049650PF12773DZR5298.57.3
TkA04G049650PF18717CxC46336.77.3
TkA04G049650PF13920zf-C3HC4_37290.001319.2
TkA04G049650PF13639zf-RING_28285e-1349.8
TkA04G049650PF13923zf-C3HC4_28285e-0730.1
TkA04G049650PF00097zf-C3HC48281.3e-0525.7
TkA04G049650PF13445zf-RING_UBOX8267e-0523.5
TkA04G049650PF14634zf-RING_58290.009416.6
TkA04G049650PF06906DUF12728330.03315.0
TkA04G049650PF17122zf-C3H2C38290.5211.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q940T5Arabidopsis thalianasp|Q940T5|RDUF2_ARATH E3 ubiquitin-protein ligase RDUF251.800%Swiss-ProtHigh
Q9SNB6Arabidopsis thalianasp|Q9SNB6|RDUF1_ARATH E3 ubiquitin-protein ligase RDUF145.200%Swiss-ProtMedium
O22283Arabidopsis thalianasp|O22283|RHC2A_ARATH Probable E3 ubiquitin-protein ligase RHC2A44.100%Swiss-ProtMedium
Q94AK4Arabidopsis thalianasp|Q94AK4|RZF1_ARATH E3 ubiquitin-protein ligase RZF132.500%Swiss-ProtMedium
O22197Arabidopsis thalianasp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A33.600%Swiss-ProtMedium

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