RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G048590
Reference: TK1151 Chr: Chr04 Coordinates: 13032132-13036806 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3301 bp · TkA04G048590|TK1151|cDNA

CCCAAGTTTTAATTTATTAAAATTAGTACCACATCTTAGAAAAACCTACACTTCCCCTTGGCCGCGTTTCCTGTTCCCCATACCGTCGATAGTCGTGGCCTAAAACCAGAACAAACAAATATCTGGTATTTTCGTCGAACACCTCACGGGTTCTCTTTTCTCCTGATAATATCATCATCGTCGTCGTCAACAAAAAGCTTTGCGTATTTTTCTTCAACTAAGAATCTTATGTTAGTTCGTTGAAAGGCTAAATCTTTATC...

CDS

Download CDS FASTA

2469 bp · TkA04G048590|TK1151|CDS

ATGATGTTTTCAAGACTTGGTCGGTCGATCTCTCGATCGGCTCGTTCAAGGAATGTTCTGAGTGGTGGGAATGGCGGAAGGTCACAGATTTTGACCGATTCTCAAGCATATCAATCTCAACATATTGGACAAGCAGATGATAGCGTGGGGGTTTTAAAGCGTTATTTAGGTTCTCTAGCAGCTAACAATGAACGATTCGGTTCTGGGTTATCATCCAAGACGTATCTATCGGATATAAAATATGTTCTCGCAAACCCTAA...

Protein

Download Protein FASTA

822 aa · TkA04G048590|TK1151|PROTEIN

MMFSRLGRSISRSARSRNVLSGGNGGRSQILTDSQAYQSQHIGQADDSVGVLKRYLGSLAANNERFGSGLSSKTYLSDIKYVLANPKFQRFFSSEAPKKKNYENFFPKEKKETPKGNNQKSESKEESSTEDDGSFFPKQFNFQIPIPLLVIGLLLFSSLSSFGPREQKQISFQEFKNKLLEPGLVDHIVISNKSVAKVYVRNTPRNQSTDSSIEGTSIDSPARVNTSQYKYYFNIGSVESFEEKLEEAQETLGIDSHDYV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G048590
TK1151 IDTkA04G048590
OH-1004 IDLXL04_036415
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G048590
LocationChr04:13032132-13036806 (+)
DescriptionSimilar to FTSH10: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g29080 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
At1g07510 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0458400 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Os01g0842600 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036415 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006465 signal peptide processing Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0034982 mitochondrial protein processing Biological Process
GO:0051604 protein maturation Biological Process
GO:0065003 protein-containing complex assembly Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005745 m-AAA complex Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0097002 mitochondrial inner boundary membrane Cellular Component
GO:0004176 ATP-dependent peptidase activity Molecular Function
KEGG gene cross-reference
ath:AT1G07510
ath:AT2G29080
dosa:Os01g0842600
dosa:Os05g0458400
sce:YMR089C
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.927
Rank 1 · TkA04G048590 · TK1151
Cytoplasm0.065
Rank 2 · TkA04G048590 · TK1151
Nucleus0.054
Rank 3 · TkA04G048590 · TK1151
Plastid0.038
Rank 4 · TkA04G048590 · TK1151
Cell membrane0.025
Rank 5 · TkA04G048590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06480FtsH_ext144-257 aa
PF08298AAA_PrkA317-404 aa
PF13191AAA_16366-387 aa
PF06068TIP49367-403 aa
PF05496RuvB_N369-435 aa
PF01078Mg_chelatase369-385 aa
PF00004AAA370-502 aa
PF07728AAA_5370-437 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G048590PF06480FtsH_ext1442575.3e-1349.8
TkA04G048590PF08298AAA_PrkA3174040.1911.5
TkA04G048590PF13191AAA_163663870.0216.1
TkA04G048590PF06068TIP493674030.002717.6
TkA04G048590PF05496RuvB_N3694350.01316.0
TkA04G048590PF01078Mg_chelatase3693850.1112.7
TkA04G048590PF00004AAA3705026e-43147.1
TkA04G048590PF07728AAA_53704370.0009120.0
TkA04G048590PF13401AAA_223703870.004518.0
TkA04G048590PF07724AAA_23704380.02515.4
TkA04G048590PF13238AAA_183703850.05614.6
TkA04G048590PF13671AAA_333704130.0614.4
TkA04G048590PF13173AAA_143704370.07113.8
TkA04G048590PF13207AAA_173724070.0514.6
TkA04G048590PF13191AAA_164144370.0216.1
TkA04G048590PF13401AAA_224164800.004518.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84WU8Arabidopsis thalianasp|Q84WU8|FTSH3_ARATH ATP-dependent zinc metalloprotease FTSH 3, mitochondrial74.000%Swiss-ProtHigh
Q8VZI8Arabidopsis thalianasp|Q8VZI8|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial71.000%Swiss-ProtHigh
Q0DHL4Oryza sativa subsp. japonicasp|Q0DHL4|FTSH8_ORYSJ ATP-dependent zinc metalloprotease FTSH 8, mitochondrial71.200%Swiss-ProtHigh
Q8S2A7Oryza sativa subsp. japonicasp|Q8S2A7|FTSH3_ORYSJ ATP-dependent zinc metalloprotease FTSH 3, mitochondrial70.000%Swiss-ProtHigh

JBrowse

View in Genome Browser