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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G046910
Reference: TK1151 Chr: Chr04 Coordinates: 12620511-12621299 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

696 bp · TkA04G046910|TK1151|cDNA

ATGGGAGATGGGTTTCCGATTCACAGAGGCGATATCTTTCACACCATCAATCGTTTACGCAAACGTAAATTCAATAAGCGTGCCCTGGAGGTAATGGAATGGGTAATTAGGGAAAGACCCTACATGCCGAAACAACTGGACTACTCATTTCTGCTAGAATTCACCGCTAAGCTCCACGGAATACCACAAGGTGAGAAGCTCTTTTCTCATATCCCTTCCGAGTTCCAAGACGAATTACTCTACAACAACCTCGTGATCGC...

CDS

Download CDS FASTA

696 bp · TkA04G046910|TK1151|CDS

ATGGGAGATGGGTTTCCGATTCACAGAGGCGATATCTTTCACACCATCAATCGTTTACGCAAACGTAAATTCAATAAGCGTGCCCTGGAGGTAATGGAATGGGTAATTAGGGAAAGACCCTACATGCCGAAACAACTGGACTACTCATTTCTGCTAGAATTCACCGCTAAGCTCCACGGAATACCACAAGGTGAGAAGCTCTTTTCTCATATCCCTTCCGAGTTCCAAGACGAATTACTCTACAACAACCTCGTGATCGC...

Protein

Download Protein FASTA

231 aa · TkA04G046910|TK1151|PROTEIN

MGDGFPIHRGDIFHTINRLRKRKFNKRALEVMEWVIRERPYMPKQLDYSFLLEFTAKLHGIPQGEKLFSHIPSEFQDELLYNNLVIACLDKGMIRLSLAYMKKMRELGHSISYMVFNRLIILHSSPSRRKSIPKILTQMKADKVPRHVSTYNILLKMDGSHQHNIQGLNKVFDDMKRANVEPNEITYCIIATAHAVARLYTACETYIEAIEKSMTGKNWSTLDILVYYTGI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G046910
TK1151 IDTkA04G046910
OH-1004 IDLXL04_036435
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.000
Protein coverage (%)TK1151 99.567 / OH-1004 41.865
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G046910
LocationChr04:12620511-12621299 (+)
DescriptionSimilar to At1g07590: Pentatricopeptide repeat-containing protein At1g07590, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07590 Pentatricopeptide repeat-containing protein At1g07590, mitochondrial. No verified direct reference in this release
At1g28020 Putative pentatricopeptide repeat-containing protein At1g28020. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036435 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1902775 mitochondrial large ribosomal subunit assembly Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0140978 mitochondrial large ribosomal subunit binding Molecular Function
KEGG gene cross-reference
ath:AT1G02150
ath:AT1G07590
ath:AT1G15480
ath:AT1G60770
ath:AT1G80270
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.919
Rank 1 · TkA04G046910 · TK1151
Nucleus0.043
Rank 2 · TkA04G046910 · TK1151
Cytoplasm0.038
Rank 3 · TkA04G046910 · TK1151
Plastid0.025
Rank 4 · TkA04G046910 · TK1151
Cell membrane0.014
Rank 5 · TkA04G046910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26565PH_3919-105 aa
PF13812PPR_325-53 aa
PF13041PPR_278-110 aa
PF13812PPR_381-120 aa
PF01535PPR81-108 aa
PF23276TPR_2490-206 aa
PF17177PPR_long95-151 aa
PF13812PPR_3103-159 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G046910PF26565PH_39191050.1812.3
TkA04G046910PF13812PPR_325534.4e-0833.8
TkA04G046910PF13041PPR_2781104e-1246.8
TkA04G046910PF13812PPR_3811204.4e-0833.8
TkA04G046910PF01535PPR811080.06514.2
TkA04G046910PF23276TPR_24902060.05214.2
TkA04G046910PF17177PPR_long951510.01415.5
TkA04G046910PF13812PPR_31031594.4e-0833.8
TkA04G046910PF13041PPR_21161564e-1246.8
TkA04G046910PF09631Sen151171920.2212.6
TkA04G046910PF17177PPR_long1362120.01415.5
TkA04G046910PF22986Fn3_ELFN1431950.02415.3
TkA04G046910PF19189Mtf21481940.008316.6
TkA04G046910PF01535PPR1491560.06514.2
TkA04G046910PF13812PPR_31631904.4e-0833.8
TkA04G046910PF26565PH_391631770.1812.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q940Q2Arabidopsis thalianasp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590, mitochondrial67.000%Swiss-ProtHigh
Q9C7F1Arabidopsis thalianasp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g2802025.600%Swiss-ProtLow

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