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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G043220
Reference: TK1151 Chr: Chr04 Coordinates: 11622346-11622957 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

612 bp · TkA04G043220|TK1151|cDNA

ATGGCTTCAAGTCCTACACAACCTCCTAGCTTACATCATTCATGGAGTCCAATAGTGATTGCTATTGTCGGCACCATGGGAACTCTATTTCTAGTTTTTAGTTACTTTAACATACTAAAACGCTGTTCATTTCGCGAATCGTCAAGAAATGGTCAAAGAAGGCGTTTACGTGGCACAAATCTTGATGGTAATAATGATCATTCCTTACAGTTCCAGAGCCGTGGACTTGATTCATTCGCTGTTCAAATGATTCCCGCAAC...

CDS

Download CDS FASTA

612 bp · TkA04G043220|TK1151|CDS

ATGGCTTCAAGTCCTACACAACCTCCTAGCTTACATCATTCATGGAGTCCAATAGTGATTGCTATTGTCGGCACCATGGGAACTCTATTTCTAGTTTTTAGTTACTTTAACATACTAAAACGCTGTTCATTTCGCGAATCGTCAAGAAATGGTCAAAGAAGGCGTTTACGTGGCACAAATCTTGATGGTAATAATGATCATTCCTTACAGTTCCAGAGCCGTGGACTTGATTCATTCGCTGTTCAAATGATTCCCGCAAC...

Protein

Download Protein FASTA

203 aa · TkA04G043220|TK1151|PROTEIN

MASSPTQPPSLHHSWSPIVIAIVGTMGTLFLVFSYFNILKRCSFRESSRNGQRRRLRGTNLDGNNDHSLQFQSRGLDSFAVQMIPATQFKKKKESDKVINQCDESTECAICLGEYEDDEWVKTIPNCSHVFHVSCIDTWFQTHSSCPLCRSDIFDLEVSVSECRSRGNNLIGEAVDEERLVFYQTLRSHILQNSNFASLDHNL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G043220
TK1151 IDTkA04G043220
OH-1004 IDLXL04_036467
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G043220
LocationChr04:11622346-11622957 (-)
DescriptionSimilar to ATL1: RING-H2 finger protein ATL1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g04360 RING-H2 finger protein ATL1. No verified direct reference in this release
At5g43420 RING-H2 finger protein ATL16. No verified direct reference in this release
At1g72200 RING-H2 finger protein ATL11. No verified direct reference in this release
At3g16720 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At2g35000 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036467 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G04360
ath:AT1G72200
ath:AT4G17905
ath:AT4G40070
ath:AT5G43420
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.267
Rank 1 · TkA04G043220 · TK1151
Cytoplasm0.254
Rank 2 · TkA04G043220 · TK1151
Nucleus0.221
Rank 3 · TkA04G043220 · TK1151
Lysosome / Vacuole0.218
Rank 4 · TkA04G043220 · TK1151
Endoplasmic reticulum0.205
Rank 5 · TkA04G043220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17869Cys_box80-118 aa
PF23412zf_RING_Vps887-99 aa
PF12906RINGv91-102 aa
PF05883Baculo_RING92-152 aa
PF14446Prok-RING_1103-136 aa
PF13920zf-C3HC4_3105-153 aa
PF11793FANCL_C105-145 aa
PF13639zf-RING_2107-150 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G043220PF17869Cys_box801180.3111.8
TkA04G043220PF23412zf_RING_Vps887992.58.7
TkA04G043220PF12906RINGv911020.006817.2
TkA04G043220PF05883Baculo_RING921520.01915.7
TkA04G043220PF14446Prok-RING_11031367.47.5
TkA04G043220PF13920zf-C3HC4_31051530.001119.5
TkA04G043220PF11793FANCL_C1051450.2112.6
TkA04G043220PF13639zf-RING_21071501.1e-1455.2
TkA04G043220PF17123zf-RING_111071365e-1039.6
TkA04G043220PF13923zf-C3HC4_21071491.1e-0938.6
TkA04G043220PF12678zf-rbx11071508e-0936.3
TkA04G043220PF14634zf-RING_51071501.1e-0526.1
TkA04G043220PF21202SLX1_C1071500.03815.0
TkA04G043220PF22908PHD_NSD1071443.08.9
TkA04G043220PF00097zf-C3HC41081491e-0732.4
TkA04G043220PF13445zf-RING_UBOX1081476.1e-0626.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P93823Arabidopsis thalianasp|P93823|ATL1_ARATH RING-H2 finger protein ATL137.500%Swiss-ProtMedium
Q9LSW9Arabidopsis thalianasp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL1635.000%Swiss-ProtMedium
Q84W40Arabidopsis thalianasp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL1131.000%Swiss-ProtMedium
Q8L9T5Arabidopsis thalianasp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL235.700%Swiss-ProtMedium
O64763Arabidopsis thalianasp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL930.400%Swiss-ProtMedium

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