TkA04G041610 | RubberDandelionOmics

Gene overview

TkA04G041610

Reference: TK1151 Chr: Chr04 Coordinates: 11159778-11161752 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1448 bp · TkA04G041610|TK1151|cDNA

CGGTATTCCAAATTATTTTTAGTAGTTTCAAAACTAAAAATAACTTGGTTGGTTAACTTAAATCTGAAACAATATATAAAGACACTAACAACTAGACTAATATATATGAAAAGTGACAAAAGAAAGAAAATGATGAAAAATATAACGATATTTGCGATTCTTCATATTACAATATTCATGAAAATGGCGAGTAGCAACAAAACGGTAAATCAAATTAAGGCAATGTATGTGTTGGGGGATTCTTCAGTTGATTGTGGAGA...

CDS

Download CDS FASTA

1221 bp · TkA04G041610|TK1151|CDS

CGGTATTCCAAATTATTTTTAGTAGTTTCAAAACTAAAAATAACTTGGTTGGTTAACTTAAATCTGAAACAATATATAAAGACACTAACAACTAGACTAATATATATGAAAAGTGACAAAAGAAAGAAAATGATGAAAAATATAACGATATTTGCGATTCTTCATATTACAATATTCATGAAAATGGCGAGTAGCAACAAAACGGTAAATCAAATTAAGGCAATGTATGTGTTGGGGGATTCTTCAGTTGATTGTGGAGA...

Protein

Download Protein FASTA

406 aa · TkA04G041610|TK1151|PROTEIN

RYSKLFLVVSKLKITWLVNLNLKQYIKTLTTRLIYMKSDKRKKMMKNITIFAILHITIFMKMASSNKTVNQIKAMYVLGDSSVDCGENTLFFPFLLNNLSLHPCDGPPSALLPHLLAKKIGLPYPVPFYSQNGSAEVLLRGVNLGSTGATIMSNPTNSVLQSLNQQLRQAFEIFQLLQLELGQETATNFIQSSTLFYLSFGKDDYIDLFRSNSSMGPGSNTTQLSHILVDQMTNAIEYLYGSSVRKFIFMGILPLGCAPR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G041610`
TK1151 ID	TkA04G041610
OH-1004 ID	LXL04_036486
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 94.639 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G041610

Location Chr04:11159778-11161752 (+)

Description Similar to At1g71250: GDSL esterase/lipase At1g71250

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71250`	GDSL esterase/lipase At1g71250.	No verified direct reference in this release
`At4g26790`	GDSL esterase/lipase At4g26790.	No verified direct reference in this release
`At5g41890`	GDSL esterase/lipase At5g41890.	No verified direct reference in this release
`At3g27950`	GDSL esterase/lipase At3g27950.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036486 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016297 fatty acyl-[ACP] hydrolase activity Molecular Function

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G71250

ath:AT1G71691

ath:AT2G04570

ath:AT2G23540

ath:AT3G50400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.289

Rank 1 · TkA04G041610 · TK1151

Endoplasmic reticulum0.186

Rank 2 · TkA04G041610 · TK1151

Extracellular0.173

Rank 3 · TkA04G041610 · TK1151

Lysosome / Vacuole0.145

Rank 4 · TkA04G041610 · TK1151

Cytoplasm0.136

Rank 5 · TkA04G041610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00309Sigma54_AID20-27 aa

PF00657Lipase_GDSL76-383 aa

PF00309Sigma54_AID161-184 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G041610	`PF00309`	Sigma54_AID	20	27	1.8	9.2
TkA04G041610	`PF00657`	Lipase_GDSL	76	383	3e-17	64.2
TkA04G041610	`PF00309`	Sigma54_AID	161	184	1.8	9.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FVV1`	Arabidopsis thaliana	sp\|Q9FVV1\|GDL28_ARATH GDSL esterase/lipase At1g71250	29.300%	Swiss-Prot	Low
`Q8VY93`	Arabidopsis thaliana	sp\|Q8VY93\|GDL66_ARATH GDSL esterase/lipase At4g26790	27.400%	Swiss-Prot	Low
`Q9FJ25`	Arabidopsis thaliana	sp\|Q9FJ25\|GDL81_ARATH GDSL esterase/lipase At5g41890	22.300%	Swiss-Prot	Low
`Q9LII9`	Arabidopsis thaliana	sp\|Q9LII9\|GDL54_ARATH GDSL esterase/lipase At3g27950	24.300%	Swiss-Prot	Low

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