LXL04_036486 | RubberDandelionOmics

Gene overview

LXL04_036486

Reference: OH-1004 Chr: Chr08 Coordinates: 43151030-43152846 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1290 bp · LXL04_036486|LXL04_036486|OH1004|cDNA

ATGGTCTTCTATACGACCTGCATACTAAATGGATGCATGGTAAATTCTAAAAACATTTGTGCTCTAAAACGGTATTCCAAATTATTTTTAGTAGTTTCAAAACTAAAAATAACTTGGTTGGTTAACTTAAATCTGAAACAATATATAAAGACACTAACAACTAGACTAATATATATGACAAGTgacaaaagaaagaaaatgatgaaaaatAAAACGATATTTGCGATTCTTCATATTACAATATTCATGAAAATGGCGAG...

CDS

Download CDS FASTA

1290 bp · LXL04_036486|LXL04_036486|OH1004|CDS

ATGGTCTTCTATACGACCTGCATACTAAATGGATGCATGGTAAATTCTAAAAACATTTGTGCTCTAAAACGGTATTCCAAATTATTTTTAGTAGTTTCAAAACTAAAAATAACTTGGTTGGTTAACTTAAATCTGAAACAATATATAAAGACACTAACAACTAGACTAATATATATGACAAGTGACAAAAGAAAGAAAATGATGAAAAATAAAACGATATTTGCGATTCTTCATATTACAATATTCATGAAAATGGCGAG...

Protein

Download Protein FASTA

429 aa · LXL04_036486|LXL04_036486|OH1004|PROTEIN

MVFYTTCILNGCMVNSKNICALKRYSKLFLVVSKLKITWLVNLNLKQYIKTLTTRLIYMTSDKRKKMMKNKTIFAILHITIFMKMASSNKTVNQIKAMYVLGDSSVDCGENTLFFPFLLNNLSLHPCDGPPSALLPHLLAKKIGLPYPVPFYSQNGSAEVLLRGVNLGSTGATIMSNPTNSVLQSLNQQLRQAFEIFQLLQLELGQETATNFIQSSTLFYLSFGKDDYIDLFRSNSSMGPGSNTTQLSHILVDQMTNAIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036486`
TK1151 ID	TkA04G041610
OH-1004 ID	LXL04_036486
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 94.639 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036486

Location Chr08:43151030-43152846 (-)

Description Similar to At1g71250: GDSL esterase/lipase At1g71250

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71250`	GDSL esterase/lipase At1g71250.	No verified direct reference in this release
`At1g71691`	GDSL esterase/lipase At1g71691.	No verified direct reference in this release
`At3g50400`	GDSL esterase/lipase At3g50400.	No verified direct reference in this release
`At2g23540`	GDSL esterase/lipase At2g23540.	No verified direct reference in this release
`At2g04570`	GDSL esterase/lipase At2g04570.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036486 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016297 fatty acyl-[ACP] hydrolase activity Molecular Function

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G71250

ath:AT1G71691

ath:AT2G04570

ath:AT2G23540

ath:AT3G50400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.321

Rank 1 · LXL04_036486 · OH-1004

Endoplasmic reticulum0.183

Rank 2 · LXL04_036486 · OH-1004

Extracellular0.160

Rank 3 · LXL04_036486 · OH-1004

Lysosome / Vacuole0.141

Rank 4 · LXL04_036486 · OH-1004

Cytoplasm0.139

Rank 5 · LXL04_036486 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL99-406 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036486	`PF00657.29`	Lipase_GDSL	99	406	3.5e-17	64.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FVV1`	Arabidopsis thaliana	GDSL esterase/lipase At1g71250	28.424%	Swiss-Prot	weak database homology
`Q9SF78`	Arabidopsis thaliana	GDSL esterase/lipase At1g71691	27.326%	Swiss-Prot	weak database homology
`Q9M2R9`	Arabidopsis thaliana	GDSL esterase/lipase At3g50400	28.490%	Swiss-Prot	weak database homology
`O80470`	Arabidopsis thaliana	GDSL esterase/lipase At2g23540	25.722%	Swiss-Prot	weak database homology
`Q9SJB4`	Arabidopsis thaliana	GDSL esterase/lipase At2g04570	28.000%	Swiss-Prot	weak database homology

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