TkA04G035360 | RubberDandelionOmics

Gene overview

TkA04G035360

Reference: TK1151 Chr: Chr04 Coordinates: 9508150-9511900 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2179 bp · TkA04G035360|TK1151|cDNA

TTGAACATTAATTTGGTTTGTGATTCAGGTGGGACTTTTGCGTTGTATTCGTTACTCTGTCGGCATGCGAAAATTAGTATGCTTCCAAATCAACAAGAAACCGATGAGAAATTGTCTGCGTATGGTGTCGCGAAAACAGCAGAAACATGGCAAAGCTTTGAATTGAAGTCGTTTTTTGAAAAACATAAAAAGTTTCGAAAAGGGTTGTTGATTTTTGTTCTTCTCGGAACCTGTATGACAATCGGCGACGGCGTTTTCAC...

CDS

Download CDS FASTA

2271 bp · TkA04G035360|TK1151|CDS

ATGTTTCATCCTAATCCTTCTCTCGACTCCATTGAATATGGCCTCCAAAACCAGAAATTAAACAAGGCATCATGTACGGCGGTTTTGAGTTTAGCATACCAGAGTCTTGGAGTCGTATACGGCGATCTAAGCACTTCCCCTCTCTACGTTTACAAAACCACATTCTCAGGGAAGCTTAGTCTTCACGAAGACGATGAAGAAATTTACGGCGTTCTTTCCTTCATCTTCTGGACTTTTACGCTAATCGCCCTCCTTAAATA...

Protein

Download Protein FASTA

756 aa · TkA04G035360|TK1151|PROTEIN

MFHPNPSLDSIEYGLQNQKLNKASCTAVLSLAYQSLGVVYGDLSTSPLYVYKTTFSGKLSLHEDDEEIYGVLSFIFWTFTLIALLKYVFIVMSADDNGEGGTFALYSLLCRHAKISMLPNQQETDEKLSAYGVAKTAETWQSFELKSFFEKHKKFRKGLLIFVLLGTCMTIGDGVFTPAISVLSAVSGVRIKVAGLHENYVVAISCVLLVGLFSIQHHGTHRVAFLFAPIVTAWLLSIAGIGIYNIIQWNPQIFHALSPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G035360`
TK1151 ID	TkA04G035360
OH-1004 ID	LXL04_036582
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G035360

Location Chr04:9508150-9511900 (-)

Description Similar to POT1: Potassium transporter 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g30070`	High-affinity potassium transporter that could play a major role in the uptake of potassium from the rhizosphere.	AtKUP1: an Arabidopsis gene encoding high-affinity potassium transport activity.1998 · DOI: 10.1105/tpc.10.1.51
`At3g02050`	High-affinity potassium transporter.	AtKUP1: an Arabidopsis gene encoding high-affinity potassium transport activity.1998 · DOI: 10.1105/tpc.10.1.51

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0669700`	High-affinity potassium transporter.	Inventory and functional characterization of the HAK potassium transporters of rice.2002 · DOI: 10.1104/pp.007781
`Os01g0935500`	High-affinity potassium transporter.	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells.2011 · DOI: 10.1016/j.jbiosc.2010.10.014
`Os01g0369300`	High-affinity potassium transporter.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036582 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006813 potassium ion transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0015079 potassium ion transmembrane transporter activity Molecular Function

GO:0015081 sodium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G30070

ath:AT2G40540

dosa:Os01g0369300

dosa:Os01g0935500

dosa:Os07g0669700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.454

Rank 1 · TkA04G035360 · TK1151

Lysosome / Vacuole0.312

Rank 2 · TkA04G035360 · TK1151

Cytoplasm0.132

Rank 3 · TkA04G035360 · TK1151

Endoplasmic reticulum0.117

Rank 4 · TkA04G035360 · TK1151

Golgi apparatus0.092

Rank 5 · TkA04G035360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02705K_trans30-503 aa

PF11293DUF3094153-177 aa

PF11293DUF3094402-416 aa

PF22776K_trans_C533-754 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G035360	`PF02705`	K_trans	30	503	4.5e-160	533.8
TkA04G035360	`PF11293`	DUF3094	153	177	0.18	12.2
TkA04G035360	`PF11293`	DUF3094	402	416	0.18	12.2
TkA04G035360	`PF22776`	K_trans_C	533	754	4.8e-26	92.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O22397`	Arabidopsis thaliana	sp\|O22397\|POT1_ARATH Potassium transporter 1	70.200%	Swiss-Prot	High
`Q9LD18`	Arabidopsis thaliana	sp\|Q9LD18\|POT4_ARATH Potassium transporter 4	53.100%	Swiss-Prot	High
`Q8H3P9`	Oryza sativa subsp. japonica	sp\|Q8H3P9\|HAK7_ORYSJ Potassium transporter 7	56.800%	Swiss-Prot	High
`Q942X8`	Oryza sativa subsp. japonica	sp\|Q942X8\|HAK2_ORYSJ Probable potassium transporter 2	56.000%	Swiss-Prot	High
`Q5ZC87`	Oryza sativa subsp. japonica	sp\|Q5ZC87\|HAK3_ORYSJ Probable potassium transporter 3	54.200%	Swiss-Prot	High

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